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Cmc05g0143541 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc05g0143541
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionVQ domain-containing protein
Genome locationCMiso1.1chr05:27127120..27127979
RNA-Seq ExpressionCmc05g0143541
SyntenyCmc05g0143541
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]3.1e-7799.31Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCYGSASGDVLFDDRI DGDEGRYWRGEMEGSFSGFQASSCVNIW
Subjt:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]5.5e-5887.07Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYG-SASGDVLFDDRIGDGDEGRYWRGEME-GSFSGFQASSCVNIW
        DCYG SASGDVLF DRI DGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DCYG-SASGDVLFDDRIGDGDEGRYWRGEME-GSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2253.1Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCY   S D     R+          GEM+ S  GFQA S V++W
Subjt:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]9.8e-2355.17Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCY   S D    D IG         GEM+ S  GFQA S V++W
Subjt:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]6.3e-3876.72Show/hide
Query:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIGDGDEGRYWRGEM
        QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP HDA FDQS +DFN  FYPPP S + P  SFDP+DCY SASGDVLFD           W+GEM
Subjt:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIGDGDEGRYWRGEM

Query:  EGSFSGFQASSCVNIW
        EGSFSGFQASSCVN W
Subjt:  EGSFSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein2.7e-5887.07Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYG-SASGDVLFDDRIGDGDEGRYWRGEME-GSFSGFQASSCVNIW
        DCYG SASGDVLF DRI DGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DCYG-SASGDVLFDDRIGDGDEGRYWRGEME-GSFSGFQASSCVNIW

A0A5A7VDH6 VQ motif-containing protein1.5e-7799.31Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCYGSASGDVLFDDRI DGDEGRYWRGEMEGSFSGFQASSCVNIW
Subjt:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like3.8e-2056.03Show/hide
Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD--HDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIGDGDEGRYWRGEM
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS++   VS DP+  YG  SG      ++G+  EG + + EM
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD--HDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIGDGDEGRYWRGEM

Query:  EGSFSGFQASSCVNIW
        +G FSGFQA SCVN +
Subjt:  EGSFSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like4.7e-2355.17Show/hide
Query:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPR

Query:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW
        DCY   S D    D IG         GEM+ S  GFQA S V++W
Subjt:  DCYGSASGDVLFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW

W9RT96 VQ domain-containing protein1.3e-0938.61Show/hide
Query:  SQNSNKPTTIDQ------QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS--------PDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCY
        SQ  N P    Q      + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S          HD + +++   F+ +          PG S    D +
Subjt:  SQNSNKPTTIDQ------QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS--------PDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCY

Query:  GSASGD-VLFDDR-----------------IGDGDE-GRYWRGEMEGSFSGFQASSCV
           S D  L DDR                 +G  DE G +WR E+  SF+GFQ SSC+
Subjt:  GSASGD-VLFDDR-----------------IGDGDE-GRYWRGEMEGSFSGFQASSCV

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic2.1e-0431.06Show/hide
Query:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDP-----RDCYGSASGDVLF
        S    K TT    NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D       S    +H   PP  + +   +  +P      DCY   + + +F
Subjt:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDP-----RDCYGSASGDVLF

Query:  DDRIGDGDEGRYWRGEMEGSFSGFQASSCVNI
                       +M   FSGF ++   N+
Subjt:  DDRIGDGDEGRYWRGEMEGSFSGFQASSCVNI

Arabidopsis top hitse value%identityAlignment
AT3G56710.1 sigma factor binding protein 11.5e-0531.06Show/hide
Query:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDP-----RDCYGSASGDVLF
        S    K TT    NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D       S    +H   PP  + +   +  +P      DCY   + + +F
Subjt:  SQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDP-----RDCYGSASGDVLF

Query:  DDRIGDGDEGRYWRGEMEGSFSGFQASSCVNI
                       +M   FSGF ++   N+
Subjt:  DDRIGDGDEGRYWRGEMEGSFSGFQASSCVNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTGATCACAACCCTTCCAACTGATTTTCATCATAGAAAAGTTAGCCAAAATTCCAACAAACCAACCACAATTGATCAACAAAACAAGCCCATCAAAGTGAA
GTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGCTAATTTTGATC
AATCAGTTCAAGATTTTAACCATGCTTTTTATCCGCCACCACCCTCGTCCTCCACCCCCGGGGTTTCTTTCGATCCTAGGGATTGTTATGGTTCGGCCTCCGGTGATGTA
CTCTTCGACGACCGGATTGGGGACGGTGATGAAGGACGGTACTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGA
mRNA sequenceShow/hide mRNA sequence
TCCTACAAAAACCCCTCAAATTGTCTCATCACAAACAACAAATCAAATTTCCCTTTTAATTCTTCCTTTCCCAATTTTTCCTCTCTTTTCTTTATGGAGAATTTGATCAC
AACCCTTCCAACTGATTTTCATCATAGAAAAGTTAGCCAAAATTCCAACAAACCAACCACAATTGATCAACAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCA
TGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGCTAATTTTGATCAATCAGTTCAAGATTTT
AACCATGCTTTTTATCCGCCACCACCCTCGTCCTCCACCCCCGGGGTTTCTTTCGATCCTAGGGATTGTTATGGTTCGGCCTCCGGTGATGTACTCTTCGACGACCGGAT
TGGGGACGGTGATGAAGGACGGTACTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGATGGAGATGAAGAAGAGGAA
AAGTTTATGGATGATGAGTAGTGACATCATGGCTTTTTTAGCTTTAAAGTATAGTTTTTGTCGGACTTTGTATTTAGTATGTGCAAGGTTATATATGAATATATAGATTT
GAGTTTTCTTTCACTATTTCAAGATCATTTTCTTTTTGGTTTCTGAAAATTAAGCCAATGCACACTACTTTTTTATTTAAAAAACTAAGAAAAAATATGTTTAATTTTCA
AAAATTAAAAACAAAAAATAACATGATTGTTAGCCTAAACAATTCTCAACTGAAAAATAAAAATGAAAGGATTTGTTTAATTGGAATATT
Protein sequenceShow/hide protein sequence
MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDV
LFDDRIGDGDEGRYWRGEMEGSFSGFQASSCVNIW