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Cmc06g0159331 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0159331
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr06:7588220..7588684
RNA-Seq ExpressionCmc06g0159331
SyntenyCmc06g0159331
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062448.1 disease resistance protein [Cucumis melo var. makuwa]4.6e-7192.91Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSK+ITEHEKHLGVVFNVMKDN+LFANEKKC+IGHSR+NYLGHWISKKGVEADGEKVK+MVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG
        PQPT+VSELRGFLGLTGYY+RFVKNYGNI APL+KLLQK G
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG

TYJ98821.1 disease resistance protein [Cucumis melo var. makuwa]1.5e-5879.86Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQ+F+PFLRR VLVFF DILIY  DITEHEKHLG+VF V++DNRLFAN+KKCVI HS++ YLGH IS KGVEAD EK+K+M+NW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK
        PQP N + LRGFLGLTGYYRRFVK YG IAAPL+KLLQK
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK

TYK03701.1 disease resistance protein [Cucumis melo var. makuwa]2.6e-5877.7Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNA ATFQSLMNQ+F+PFLRR VLVFFDDIL+YS DI+EHEKHLG+VF V++DN+L+AN+KKCV  HSR+ YLGH ISK GVEAD +K+++MVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK
        P+P+NVSELRGFLGLTGYYRRFVK Y NIA PL+KLLQK
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK

TYK23012.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]2.5e-6196.67Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDD+LIYSKDI EHEKHLG VFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVE DGEKVKTMVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYR
        PQPTNVSELRGFLGLTGYYR
Subjt:  PQPTNVSELRGFLGLTGYYR

TYK27437.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-7192.91Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSK+ITEHEKHLGVVFNVMKDN+LFANEKKC+IGHSR+NYLGHWISKKGVEADGEKVK+MVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG
        PQPT+VSELRGFLGLTGYY+RFVKNYGNI APL+KLLQK G
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG

TrEMBL top hitse value%identityAlignment
A0A5A7V4D8 Disease resistance protein2.2e-7192.91Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSK+ITEHEKHLGVVFNVMKDN+LFANEKKC+IGHSR+NYLGHWISKKGVEADGEKVK+MVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG
        PQPT+VSELRGFLGLTGYY+RFVKNYGNI APL+KLLQK G
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG

A0A5D3BJD8 Disease resistance protein7.4e-5979.86Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQ+F+PFLRR VLVFF DILIY  DITEHEKHLG+VF V++DNRLFAN+KKCVI HS++ YLGH IS KGVEAD EK+K+M+NW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK
        PQP N + LRGFLGLTGYYRRFVK YG IAAPL+KLLQK
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK

A0A5D3BVG3 Disease resistance protein1.3e-5877.7Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNA ATFQSLMNQ+F+PFLRR VLVFFDDIL+YS DI+EHEKHLG+VF V++DN+L+AN+KKCV  HSR+ YLGH ISK GVEAD +K+++MVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK
        P+P+NVSELRGFLGLTGYYRRFVK Y NIA PL+KLLQK
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK

A0A5D3DHI3 Transposon Tf2-6 polyprotein1.2e-6196.67Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDD+LIYSKDI EHEKHLG VFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVE DGEKVKTMVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYR
        PQPTNVSELRGFLGLTGYYR
Subjt:  PQPTNVSELRGFLGLTGYYR

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein2.2e-7192.91Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSK+ITEHEKHLGVVFNVMKDN+LFANEKKC+IGHSR+NYLGHWISKKGVEADGEKVK+MVNW
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG
        PQPT+VSELRGFLGLTGYY+RFVKNYGNI APL+KLLQK G
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.1e-3041.89Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGL NAPATFQ  MN I RP L +  LV+ DDI+++S  + EH + LG+VF  +    L     KC        +LGH ++  G++ + EK++ +  +
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMGSNGVTMP
        P PT   E++ FLGLTGYYR+F+ N+ +IA P++K L+K      T P
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMGSNGVTMP

P0CT41 Transposon Tf2-12 polyprotein9.8e-2437.5Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MP+G++ APA FQ  +N I        V+ + DDILI+SK  +EH KH+  V   +K+  L  N+ KC    S+V ++G+ IS+KG     E +  ++ W
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMGSNGVTMPWQPS
         QP N  ELR FLG   Y R+F+     +  PL+ LL+K     V   W P+
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMGSNGVTMPWQPS

P20825 Retrovirus-related Pol polyprotein from transposon 2979.7e-3246.76Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        MPFGL NAPATFQ  MN I RP L +  LV+ DDI+I+S  +TEH   + +VF  + D  L     KC       N+LGH ++  G++ +  KVK +V++
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK
        P PT   E+R FLGLTGYYR+F+ NY +IA P++  L+K
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK

P92523 Uncharacterized mitochondrial protein AtMg008601.0e-2556.38Show/hide
Query:  HLGVVFNVMKDNRLFANEKKCVIGHSRVNYLG--HWISKKGVEADGEKVKTMVNWPQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK
        HLG+V  + + ++ +AN KKC  G  ++ YLG  H IS +GV AD  K++ MV WP+P N +ELRGFLGLTGYYRRFVKNYG I  PL++LL+K
Subjt:  HLGVVFNVMKDNRLFANEKKCVIGHSRVNYLG--HWISKKGVEADGEKVKTMVNWPQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.2e-2537.06Show/hide
Query:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW
        +PFGL NAPA FQ +++ I R  + +   V+ DDI+++S+D   H K+L +V   +    L  N +K     ++V +LG+ ++  G++AD +KV+ +   
Subjt:  MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNW

Query:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMGSN
        P PT+V EL+ FLG+T YYR+F+++Y  +A PL+ L + + +N
Subjt:  PQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQKMGSN

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein7.4e-2756.38Show/hide
Query:  HLGVVFNVMKDNRLFANEKKCVIGHSRVNYLG--HWISKKGVEADGEKVKTMVNWPQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK
        HLG+V  + + ++ +AN KKC  G  ++ YLG  H IS +GV AD  K++ MV WP+P N +ELRGFLGLTGYYRRFVKNYG I  PL++LL+K
Subjt:  HLGVVFNVMKDNRLFANEKKCVIGHSRVNYLG--HWISKKGVEADGEKVKTMVNWPQPTNVSELRGFLGLTGYYRRFVKNYGNIAAPLSKLLQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGGTTTGACCAACGCACCGGCAACCTTCCAATCCCTAATGAACCAGATTTTTCGGCCGTTCTTGCGGAGATTTGTACTAGTGTTTTTCGACGACATACTGAT
TTATAGTAAGGACATTACGGAACATGAGAAGCATCTGGGAGTAGTTTTTAACGTGATGAAGGACAATCGGTTATTTGCCAACGAAAAGAAGTGCGTGATCGGGCATTCAA
GAGTTAATTATTTGGGCCATTGGATATCAAAAAAAGGGGTAGAAGCCGATGGTGAGAAGGTGAAAACAATGGTGAACTGGCCTCAACCAACTAACGTCTCAGAGCTGAGA
GGGTTCCTTGGATTGACGGGATACTATCGGAGGTTCGTCAAGAATTACGGAAACATTGCGGCGCCACTAAGCAAATTACTACAGAAAATGGGTTCCAATGGAGTGACGAT
GCCATGGCAGCCTTCGAATCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGGTTTGACCAACGCACCGGCAACCTTCCAATCCCTAATGAACCAGATTTTTCGGCCGTTCTTGCGGAGATTTGTACTAGTGTTTTTCGACGACATACTGAT
TTATAGTAAGGACATTACGGAACATGAGAAGCATCTGGGAGTAGTTTTTAACGTGATGAAGGACAATCGGTTATTTGCCAACGAAAAGAAGTGCGTGATCGGGCATTCAA
GAGTTAATTATTTGGGCCATTGGATATCAAAAAAAGGGGTAGAAGCCGATGGTGAGAAGGTGAAAACAATGGTGAACTGGCCTCAACCAACTAACGTCTCAGAGCTGAGA
GGGTTCCTTGGATTGACGGGATACTATCGGAGGTTCGTCAAGAATTACGGAAACATTGCGGCGCCACTAAGCAAATTACTACAGAAAATGGGTTCCAATGGAGTGACGAT
GCCATGGCAGCCTTCGAATCATTAA
Protein sequenceShow/hide protein sequence
MPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKDITEHEKHLGVVFNVMKDNRLFANEKKCVIGHSRVNYLGHWISKKGVEADGEKVKTMVNWPQPTNVSELR
GFLGLTGYYRRFVKNYGNIAAPLSKLLQKMGSNGVTMPWQPSNH