CuGenDBv2

Gene ID	Cmc06g0159571
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr06:7763459..7763929
RNA-Seq Expression	Cmc06g0159571
Synteny	Cmc06g0159571
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0018108 - peptidyl-tyrosine phosphorylation (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004674 - protein serine/threonine kinase activity (molecular function) GO:0004714 - transmembrane receptor protein tyrosine kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

GAU21337.1 hypothetical protein TSUD_189240 [Trifolium subterraneum]

3.7e-76

85.9

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISIAAL NL++HQM+VKT +LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGF++HGQE+KVCKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

GAU47690.1 hypothetical protein TSUD_245810 [Trifolium subterraneum]

1.4e-75

85.26

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISI AL NL++HQM+VKT +LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGF++HGQE+KVCKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

PNX67522.1 retrotransposon protein putative Ty1-copia sub-class, partial [Trifolium pratense]

8.2e-76

85.9

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+VDKYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISI A+ NL++HQM+VKT +LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGF+VHGQE+KVCKL+KSLYGLKQAPKQWHEKFDNL++S GFK+NESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

TYK11906.1 putative Polyprotein [Cucumis melo var. makuwa]

5.1e-78

93.59

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQM+VKT +LN DLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY++Q EGFIVHGQESKVCKLDKSLYGLKQA KQWHEKFDNL MSKGFKVNESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

TYK22685.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.7e-76

90.38

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESNRTWHLVDLPP CKAIGCKWVLRKK KPDGS+DKYKARLVAKGFRQ+EN+DFFDTFS VTRITSIRVLISIA LNNLLIHQM+VKTT+LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGFIV  QESKVCKLDKSLYGLKQAPK+WH+KFDNLLMSKGFKVNES+
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

TrEMBL top hits

e value

%identity

Alignment

A0A2K3KMQ2 Retrotransposon protein putative Ty1-copia sub-class (Fragment)

4.0e-76

85.9

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+VDKYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISI A+ NL++HQM+VKT +LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGF+VHGQE+KVCKL+KSLYGLKQAPKQWHEKFDNL++S GFK+NESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

A0A2Z6MWZ1 Reverse transcriptase Ty1/copia-type domain-containing protein

1.8e-76

85.9

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISIAAL NL++HQM+VKT +LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGF++HGQE+KVCKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

A0A2Z6PC97 CCHC-type domain-containing protein

6.8e-76

85.26

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISI AL NL++HQM+VKT +LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGF++HGQE+KVCKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

A0A5D3CNA1 Putative Polyprotein

2.5e-78

93.59

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQ+ENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQM+VKT +LN DLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY++Q EGFIVHGQESKVCKLDKSLYGLKQA KQWHEKFDNL MSKGFKVNESD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

A0A5D3DGJ1 Retrotransposon protein, putative, Ty1-copia sub-class

8.0e-77

90.38

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        MDSLESNRTWHLVDLPP CKAIGCKWVLRKK KPDGS+DKYKARLVAKGFRQ+EN+DFFDTFS VTRITSIRVLISIA LNNLLIHQM+VKTT+LNGDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGFIV  QESKVCKLDKSLYGLKQAPK+WH+KFDNLLMSKGFKVNES+
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.1e-29

44.97

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Query:  NRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIE
        N TW +   P     +  +WV   K    G+  +YKARLVA+GF QK  ID+ +TF+PV RI+S R ++S+    NL +HQM+VKT +LNG L+EEIY+ 
Subjt:  NRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIE

Query:  QPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNES
         P+G  +      VCKL+K++YGLKQA + W E F+  L    F VN S
Subjt:  QPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNES

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.6e-44

54.49

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE
        M+SL+ N T+ LV+LP G + + CKWV + K   D  + +YKARLV KGF QK+ IDF + FSPV ++TSIR ++S+AA  +L + Q++VKT +L+GDLE
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLE

Query:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        EEIY+EQPEGF V G++  VCKL+KSLYGLKQAP+QW+ KFD+ + S+ +    SD
Subjt:  EEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

P92520 Uncharacterized mitochondrial protein AtMg00820

4.0e-17

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIA
        +D+L  N+TW LV  P     +GCKWV + KL  DG++D+ KARLVAKGF Q+E I F +T+SPV R  +IR ++++A
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.1e-34

45.03

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Query:  NRTWHLVDLPPG-CKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYI
        N TW LV  PP     +GC+W+  KK   DGS+++YKARLVAKG+ Q+  +D+ +TFSPV + TSIR+++ +A   +  I Q++V   +L G L +++Y+
Subjt:  NRTWHLVDLPPG-CKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYI

Query:  EQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
         QP GFI   + + VCKL K+LYGLKQAP+ W+ +  N L++ GF  + SD
Subjt:  EQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.3e-33

43.05

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Query:  NRTWHLV-DLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYI
        N TW LV   PP    +GC+W+  KK   DGS+++YKARLVAKG+ Q+  +D+ +TFSPV + TSIR+++ +A   +  I Q++V   +L G L +E+Y+
Subjt:  NRTWHLV-DLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYI

Query:  EQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
         QP GF+   +   VC+L K++YGLKQAP+ W+ +    L++ GF  + SD
Subjt:  EQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

9.1e-41

46.84

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Query:  SLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEE
        ++E+  TW +  LPP  K IGCKWV + K   DG++++YKARLVAKG+ Q+E IDF +TFSPV ++TS++++++I+A+ N  +HQ+++   +LNGDL+EE
Subjt:  SLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEE

Query:  IYIEQPEGFIVHGQES----KVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD
        IY++ P G+     +S     VC L KS+YGLKQA +QW  KF   L+  GF  + SD
Subjt:  IYIEQPEGFIVHGQES----KVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

2.9e-18

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Query:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIA
        +D+L  N+TW LV  P     +GCKWV + KL  DG++D+ KARLVAKGF Q+E I F +T+SPV R  +IR ++++A
Subjt:  MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIA

Sequences

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CDS sequence

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ATGGACTCTCTTGAGTCCAATAGAACTTGGCATCTAGTTGACTTACCCCCTGGATGTAAAGCTATAGGTTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTGAT
GGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAAGGAAAATATAGACTTCTTTGATACTTTTTCTCCGGTCACTAGAATCACCTCT
ATTAGAGTGTTGATATCTATAGCTGCCCTAAACAATCTATTAATCCATCAGATGAATGTTAAAACAACTTACCTAAATGGTGATTTAGAAGAAGAGATTTACATA
GAACAACCTGAAGGTTTCATAGTTCACGGTCAAGAATCCAAAGTTTGCAAACTAGATAAATCCCTCTATGGCCTAAAACAAGCTCCCAAGCAATGGCACGAAAAG
TTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACTAA

mRNA sequence

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Protein sequence

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MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYI
EQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

Cmc06g0159571 (gene) of Melon (Charmono) v1.1 genome