; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0159821 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0159821
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr06:8064003..8065730
RNA-Seq ExpressionCmc06g0159821
SyntenyCmc06g0159821
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-30495.45Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPR+KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMP+RSGR+VSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFN VWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS VAML+SIRILLSIATFYDYEIW+MDVKTA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNK LALSQ TYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ  KTPQEVEDMRRIPYASAVGSLMY MLCTRP+ICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKI+LKYLRRTRDYMLVYGAKDLILTGYTD DFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKRGK  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

KAA0033121.1 gag/pol protein [Cucumis melo var. makuwa]7.7e-29793.62Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MR+HKP+NKLVL+EA DESTRVVDEVGPSSRV+ETTTSGQSHPSQSLRMP+RSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSY QAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFNL+WELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS VAML+SIRILLSIATFYDYEIWKMDV TA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGF+QNVDEPCVYKKINKGKV FLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNK LALSQ TYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQC KTPQEVEDMRRIPYASAVGSLMYV+ CTR EICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AV IVSRYQSN GLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTD DFQT+KDSRKSTS SVFTLNGG +VWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKR K  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]8.8e-30194.35Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPR+KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMP+RSGR+VSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFN VWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT++EGVDYEETFS VAML+SIRILLSIA FYDYEIW+MDVKTA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGE QYVLGIQIIRDRKNK LALSQ TYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ  KTPQEVEDMRRIPYASAVGSLMY MLCTRP+ICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYT+ DFQTDKDSRKSTS SVFTLNGG VVWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWL+KFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKRGK  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

KAA0050437.1 gag/pol protein [Cucumis melo var. makuwa]0.0e+00100Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDREEVSSDTGDCATRGCDRHQDRFGAQHC
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDREEVSSDTGDCATRGCDRHQDRFGAQHC
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDREEVSSDTGDCATRGCDRHQDRFGAQHC

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-30495.45Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPR+KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMP+RSGR+VSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFN VWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS VAML+SIRILLSIATFYDYEIW+MDVKTA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNK LALSQ TYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ  KTPQEVEDMRRIPYASAVGSLMY MLCTRP+ICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKI+LKYLRRTRDYMLVYGAKDLILTGYTD DFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKRGK  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein4.3e-30194.35Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPR+KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMP+RSGR+VSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFN VWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT++EGVDYEETFS VAML+SIRILLSIA FYDYEIW+MDVKTA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGE QYVLGIQIIRDRKNK LALSQ TYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ  KTPQEVEDMRRIPYASAVGSLMY MLCTRP+ICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYT+ DFQTDKDSRKSTS SVFTLNGG VVWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWL+KFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKRGK  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

A0A5A7TZD0 Gag/pol protein1.1e-30495.45Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPR+KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMP+RSGR+VSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFN VWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS VAML+SIRILLSIATFYDYEIW+MDVKTA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNK LALSQ TYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ  KTPQEVEDMRRIPYASAVGSLMY MLCTRP+ICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKI+LKYLRRTRDYMLVYGAKDLILTGYTD DFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKRGK  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

A0A5A7U7T0 Gag/pol protein0.0e+00100Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDREEVSSDTGDCATRGCDRHQDRFGAQHC
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDREEVSSDTGDCATRGCDRHQDRFGAQHC
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDREEVSSDTGDCATRGCDRHQDRFGAQHC

A0A5A7UYE8 Gag/pol protein1.1e-30495.45Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MRNHKPR+KLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMP+RSGR+VSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFN VWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS VAML+SIRILLSIATFYDYEIW+MDVKTA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNK LALSQ TYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ  KTPQEVEDMRRIPYASAVGSLMY MLCTRP+ICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVGIVSRYQSNPGLDHWTAVKI+LKYLRRTRDYMLVYGAKDLILTGYTD DFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKRGK  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

A0A5D3CZY3 Gag/pol protein3.7e-29793.62Show/hide
Query:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM
        MR+HKP+NKLVL+EA DESTRVVDEVGPSSRV+ETTTSGQSHPSQSLRMP+RSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSY QAMNDVDKDQWVKAM
Subjt:  MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAM

Query:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG
        DLEMESMYFNL+WELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS VAML+SIRILLSIATFYDYEIWKMDV TA LNG
Subjt:  DLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNG

Query:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        NLEESIFMSQ EGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIK YGF+QNVDEPCVYKKINKGKV FLVLYVDDILLIGND+GYLTDVKAWLAA
Subjt:  NLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
        QFQMKDLGEAQYVLGIQIIRDRKNK LALSQ TYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQC KTPQEVEDMRRIPYASAVGSLMYV+ CTR EICY
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AV IVSRYQSN GLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTD DFQT+KDSRKSTS SVFTLNGG +VWRSIKQGCIAD TMEAEYVAACEAA
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVAN KEPRSHKR K  E
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.6e-7734.66Show/hide
Query:  PLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSI
        P S+ +     DK  W +A++ E+ +   N  W +   PE    +  +W++  K +  G    +KARLVA+G+TQ+  +DYEETF+ VA + S R +LS+
Subjt:  PLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSI

Query:  ATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVY--KKINKGKVAFLVLYV
           Y+ ++ +MDVKTA LNG L+E I+M   +G         VCKLN++IYGLKQA+R W   F+ A+K   F  +  + C+Y   K N  +  +++LYV
Subjt:  ATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVY--KKINKGKVAFLVLYV

Query:  DDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHL----SKEQCSKTPQEVED
        DD+++   DM  + + K +L  +F+M DL E ++ +GI+I  + +   + LSQ  Y+ K+L +++M+N      P    ++     S E C+        
Subjt:  DDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHL----SKEQCSKTPQEVED

Query:  MRRIPYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYG---AKDLILTGYTDFDFQTDKDSRKSTSGSVFTL-N
            P  S +G LMY+MLCTRP++  AV I+SRY S    + W  +K +L+YL+ T D  L++    A +  + GY D D+   +  RKST+G +F + +
Subjt:  MRRIPYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYG---AKDLILTGYTDFDFQTDKDSRKSTSGSVFTL-N

Query:  GGVVVWRSIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK
          ++ W + +Q  +A  + EAEY+A  EA +EA+WL+  L  + +   +  PI +Y DN G ++    P  HKR K
Subjt:  GGVVVWRSIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-12243.04Show/hide
Query:  NKLVLSEATDESTRVVDEVGPSSRVDETTTSG---QSHPSQSLRMPQ---RSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMD
        N       TDE +   ++ G      E    G     HP+Q     Q   RS R   +  RY   +   V+I DD   +P S K+ ++  +K+Q +KAM 
Subjt:  NKLVLSEATDESTRVVDEVGPSSRVDETTTSG---QSHPSQSLRMPQ---RSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMD

Query:  LEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNGN
         EMES+  N  ++LV+LP+G +P+ CKW++K K+D   K+  +KARLV KG+ Q++G+D++E FS V  + SIR +LS+A   D E+ ++DVKTA L+G+
Subjt:  LEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNGN

Query:  LEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVY-KKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA
        LEE I+M Q EGF   G++  VCKLN+S+YGLKQA R W ++FD+ +K   + +   +PCVY K+ ++     L+LYVDD+L++G D G +  +K  L+ 
Subjt:  LEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVY-KKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAA

Query:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY
         F MKDLG AQ +LG++I+R+R ++ L LSQ  YI+++L R++M+N+K    P    + LSK+ C  T +E  +M ++PY+SAVGSLMY M+CTRP+I +
Subjt:  QFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICY

Query:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA
        AVG+VSR+  NPG +HW AVK IL+YLR T    L +G  D IL GYTD D   D D+RKS++G +FT +GG + W+S  Q C+A  T EAEY+AA E  
Subjt:  AVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAA

Query:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK
        KE +WL++FL +L +         +YCD+  A+   K    H R K
Subjt:  KEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK

P25600 Putative transposon Ty5-1 protein YCL074W1.1e-3232.48Show/hide
Query:  MDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGY
        MDV TA LN  ++E I++ Q  GF+ +     V +L   +YGLKQA   WN   +  +K  GF ++  E  +Y +       ++ +YVDD+L+       
Subjt:  MDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGY

Query:  LTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYV
           VK  L   + MKDLG+    LG+  I    N  + LS   YI K      +   K    P  +    SK     T   ++D+   PY S VG L++ 
Subjt:  LTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYV

Query:  MLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVY-GAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIK-QGCIADCT
            RP+I Y V ++SR+   P   H  + + +L+YL  TR   L Y     L LT Y D       D   ST G V  L G  V W S K +G I   +
Subjt:  MLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVY-GAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIK-QGCIADCT

Query:  MEAEYVAACEAAKE
         EAEY+ A E   E
Subjt:  MEAEYVAACEAAKE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-7035.82Show/hide
Query:  DPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEG-VKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILL
        +P +  QA+ D   ++W  AM  E+ +   N  W+LV  P   V  +GC+WI+ +K +S G +  +KARLVAKGY QR G+DY ETFS V    SIRI+L
Subjt:  DPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEG-VKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILL

Query:  SIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYV
         +A    + I ++DV  A L G L + ++MSQ  GFI + +   VCKL +++YGLKQA R+W +     +   GF  +V +  ++       + ++++YV
Subjt:  SIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYV

Query:  DDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRI
        DDIL+ GND   L +    L+ +F +KD  E  Y LGI+  R      L LSQ  YI  +L R +M  +K    P      LS    +K     E     
Subjt:  DDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRI

Query:  PYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDY-MLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWR
         Y   VGSL Y+   TRP+I YAV  +S++   P  +H  A+K IL+YL  T ++ + +     L L  Y+D D+  DKD   ST+G +  L    + W 
Subjt:  PYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDY-MLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWR

Query:  SIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK
        S KQ  +   + EAEY +    + E  W+   L +L +   +  P  +YCDN GA   C  P  H R K
Subjt:  SIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.9e-7335.61Show/hide
Query:  DPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELV-DLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILL
        +P +  QAM D   D+W +AM  E+ +   N  W+LV   P  V  +GC+WI+ +K +S G +  +KARLVAKGY QR G+DY ETFS V    SIRI+L
Subjt:  DPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELV-DLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILL

Query:  SIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYV
         +A    + I ++DV  A L G L + ++MSQ  GF+ + +   VC+L ++IYGLKQA R+W +   T +   GF  ++ +  ++       + ++++YV
Subjt:  SIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYV

Query:  DDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRI
        DDIL+ GND   L      L+ +F +K+  +  Y LGI+  R  +   L LSQ  Y   +L R +M  +K    P      L+    +K P   E     
Subjt:  DDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRI

Query:  PYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDY-MLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWR
         Y   VGSL Y+   TRP++ YAV  +S+Y   P  DHW A+K +L+YL  T D+ + +     L L  Y+D D+  D D   ST+G +  L    + W 
Subjt:  PYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDY-MLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWR

Query:  SIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK
        S KQ  +   + EAEY +    + E  W+   L +L +   ++ P  +YCDN GA   C  P  H R K
Subjt:  SIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.1e-7434.45Show/hide
Query:  EDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILL
        ++P +Y +A   +    W  AMD E+ +M     WE+  LP   KPIGCKW+YK K +S G ++ +KARLVAKGYTQ+EG+D+ ETFS V  L S++++L
Subjt:  EDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILL

Query:  SIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFIT-QGQE---QKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFL
        +I+  Y++ + ++D+  A LNG+L+E I+M    G+   QG       VC L +SIYGLKQASR W ++F   +  +GF Q+  +   + KI       +
Subjt:  SIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFIT-QGQE---QKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFL

Query:  VLYVDDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVED
        ++YVDDI++  N+   + ++K+ L + F+++DLG  +Y LG++I R      + + Q  Y   +L    +   K   +P    V  S    + +  +  D
Subjt:  VLYVDDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVED

Query:  MRRIPYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAK-DLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGV
         +   Y   +G LMY+ + TR +I +AV  +S++   P L H  AV  IL Y++ T    L Y ++ ++ L  ++D  FQ+ KD+R+ST+G    L   +
Subjt:  MRRIPYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAK-DLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGV

Query:  VVWRSIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE
        + W+S KQ  ++  + EAEY A   A  E +WL +F  +L++   ++ P  L+CDN+ A+        H+R K  E
Subjt:  VVWRSIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDRE

ATMG00810.1 DNA/RNA polymerases superfamily protein1.0e-2031.62Show/hide
Query:  FLVLYVDDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEV
        +L+LYVDDILL G+    L  +   L++ F MKDLG   Y LGIQI        L LSQ  Y +++L    M + K    P    ++ S    +K P   
Subjt:  FLVLYVDDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALSQVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEV

Query:  EDMRRIPYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDY-MLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNG
        +      + S VG+L Y+ L TRP+I YAV IV +    P L  +  +K +L+Y++ T  + + ++    L +  + D D+     +R+ST+G    L  
Subjt:  EDMRRIPYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDY-MLVYGAKDLILTGYTDFDFQTDKDSRKSTSGSVFTLNG

Query:  GVVVWRSIKQGCIADCTMEAEYVAACEAAKEAVW
         ++ W + +Q  ++  + E EY A    A E  W
Subjt:  GVVVWRSIKQGCIADCTMEAEYVAACEAAKEAVW

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)9.2e-1435.34Show/hide
Query:  MPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARL
        M  RS   +++ N    LT T  +      ++P S   A+ D     W +AM  E++++  N  W LV  P     +GCKW++K K  S G +   KARL
Subjt:  MPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKGYTQREGVDYEETFSLVAMLRSIRILLSIA
        VAKG+ Q EG+ + ET+S V    +IR +L++A
Subjt:  VAKGYTQREGVDYEETFSLVAMLRSIRILLSIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATCATAAACCACGAAACAAATTAGTATTAAGTGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAAACCACCAC
ATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCAACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCAGGTTGTCATAC
CAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAAT
TTAGTGTGGGAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGTTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAAACCTTCAAAGCTAG
ACTTGTGGCAAAAGGGTATACTCAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCTCTTGTTGCTATGTTAAGGTCTATAAGGATTCTCTTGTCCATCGCCACATTTT
ATGATTATGAAATATGGAAAATGGATGTCAAGACTGCTTTGTTAAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCGCGAGGGGTTCATAACCCAAGGTCAAGAG
CAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATGCTACGGTTTTGACCAGAACGT
TGATGAACCTTGTGTATATAAGAAAATCAACAAAGGAAAAGTAGCTTTCTTAGTACTTTATGTAGACGATATCCTCCTCATTGGGAATGATATGGGATACCTTACTGACG
TTAAAGCTTGGTTAGCAGCCCAATTCCAAATGAAAGATTTAGGAGAGGCACAATATGTTCTTGGGATCCAAATCATAAGGGATCGTAAGAACAAAATCCTAGCACTATCT
CAAGTAACCTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTTCTAA
GACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGCTGTGGGCAGCTTAATGTATGTTATGCTCTGCACTAGGCCAGAAATTTGTTATGCAGTGGGAA
TAGTCAGTAGGTATCAGTCCAACCCAGGGTTAGACCACTGGACGGCGGTTAAAATTATTCTTAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAG
GATTTGATCCTTACAGGATACACTGATTTTGATTTCCAAACCGATAAGGATTCTAGAAAATCCACATCGGGATCAGTGTTCACCCTAAATGGGGGAGTTGTAGTATGGCG
TAGCATCAAGCAAGGATGCATTGCAGACTGTACAATGGAGGCTGAATACGTAGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTAG
AAGTTGTTCCAAACATGAACTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTGTAAAGAACCTCGCAGCCATAAACGAGGGAAAGATAGAGAGGAA
GTATCATCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCGCTTCGGAGCACAACATTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATCATAAACCACGAAACAAATTAGTATTAAGTGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGAGTTGATGAAACCACCAC
ATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCAACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACTCAGGTTGTCATAC
CAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAAT
TTAGTGTGGGAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGTTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAAACCTTCAAAGCTAG
ACTTGTGGCAAAAGGGTATACTCAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCTCTTGTTGCTATGTTAAGGTCTATAAGGATTCTCTTGTCCATCGCCACATTTT
ATGATTATGAAATATGGAAAATGGATGTCAAGACTGCTTTGTTAAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCGCGAGGGGTTCATAACCCAAGGTCAAGAG
CAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATGCTACGGTTTTGACCAGAACGT
TGATGAACCTTGTGTATATAAGAAAATCAACAAAGGAAAAGTAGCTTTCTTAGTACTTTATGTAGACGATATCCTCCTCATTGGGAATGATATGGGATACCTTACTGACG
TTAAAGCTTGGTTAGCAGCCCAATTCCAAATGAAAGATTTAGGAGAGGCACAATATGTTCTTGGGATCCAAATCATAAGGGATCGTAAGAACAAAATCCTAGCACTATCT
CAAGTAACCTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTTCTAA
GACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGCTGTGGGCAGCTTAATGTATGTTATGCTCTGCACTAGGCCAGAAATTTGTTATGCAGTGGGAA
TAGTCAGTAGGTATCAGTCCAACCCAGGGTTAGACCACTGGACGGCGGTTAAAATTATTCTTAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAG
GATTTGATCCTTACAGGATACACTGATTTTGATTTCCAAACCGATAAGGATTCTAGAAAATCCACATCGGGATCAGTGTTCACCCTAAATGGGGGAGTTGTAGTATGGCG
TAGCATCAAGCAAGGATGCATTGCAGACTGTACAATGGAGGCTGAATACGTAGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTAG
AAGTTGTTCCAAACATGAACTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTGTAAAGAACCTCGCAGCCATAAACGAGGGAAAGATAGAGAGGAA
GTATCATCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCGCTTCGGAGCACAACATTGCTGA
Protein sequenceShow/hide protein sequence
MRNHKPRNKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFN
LVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQE
QKVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDMGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKILALS
QVTYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCSKTPQEVEDMRRIPYASAVGSLMYVMLCTRPEICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAK
DLILTGYTDFDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADCTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANCKEPRSHKRGKDREE
VSSDTGDCATRGCDRHQDRFGAQHC