CuGenDBv2

Gene ID	Cmc06g0159831
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr06:8066298..8066927
RNA-Seq Expression	Cmc06g0159831
Synteny	Cmc06g0159831
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

9.2e-107

93.81

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MTL VGTGDVISAR VGDAKLFFGNKFMFLENLYIV KIKRNLVSVSCLIEH+YSIN SMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI PNNNTYLWHLRLGHI LD+IGRLVKNGLLNKLKD SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS LCGPMNVKARGGFEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYSRYGYL
Subjt:  LDDYSRYGYL

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-105

92.86

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MTL VGTGDVISAR VGDAKLFFGNKFMFLENLYIV KIKRNLVSVSCLIEH+YSIN SMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI PNNNTYLWHLRLGHI LD+IGRLVK+GLLNKLKD SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS LCGPMNVKARG FEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYSRYGYL
Subjt:  LDDYSRYGYL

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

4.9e-76

68.1

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MT+ VGTG V+SA  VG  +L+    F+ LEN+Y+V  +KRNL+SV CL+E  YS+  ++N+ FI KNGV ICSAKLENNLYVLR   +KA+LN EMF+T
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFISL
        A TQNKR +I P  N +LWHLRLGHI L++I RLVKNGLL++L+++SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HS LCGPMNVKARGGFEYFI+ 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFISL

Query:  -DDYSRYGYL
         DDYSRYGY+
Subjt:  -DDYSRYGYL

KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-102

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        M L VGTGDVISAR VGDAKLFFGNKFMFLENLYIV KIKRNLVSVSCLIEH+YSI+ SMNEAFISKNGVHICS KLE+NLYVL+PNE KAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI  NNNTYLWHLRLGHI LD+IGRLVKNGLLNKL+DDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS LCGPMNVKA GGFEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYS YGYL
Subjt:  LDDYSRYGYL

KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-99

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MTLMVGTGDVISAR VGD KLFFG KFMFLENLYIV KIKRNLV VSCLIEH+YSIN SMNEAFISKNG     AKLE+NLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI PNNNTYLWHLRL HI LD+IGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGK YRAKEPLELIHS LCGPMNVKARGGFEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYSRYGYL
Subjt:  LDDYSRYGYL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

8.4e-106

92.86

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MTL VGTGDVISAR VGDAKLFFGNKFMFLENLYIV KIKRNLVSVSCLIEH+YSIN SMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI PNNNTYLWHLRLGHI LD+IGRLVK+GLLNKLKD SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS LCGPMNVKARG FEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYSRYGYL
Subjt:  LDDYSRYGYL

A0A5A7TU93 Gag/pol protein

2.4e-76

68.1

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MT+ VGTG V+SA  VG  +L+    F+ LEN+Y+V  +KRNL+SV CL+E  YS+  ++N+ FI KNGV ICSAKLENNLYVLR   +KA+LN EMF+T
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFISL
        A TQNKR +I P  N +LWHLRLGHI L++I RLVKNGLL++L+++SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HS LCGPMNVKARGGFEYFI+ 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFISL

Query:  -DDYSRYGYL
         DDYSRYGY+
Subjt:  -DDYSRYGYL

A0A5A7TZD0 Gag/pol protein

4.5e-107

93.81

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MTL VGTGDVISAR VGDAKLFFGNKFMFLENLYIV KIKRNLVSVSCLIEH+YSIN SMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI PNNNTYLWHLRLGHI LD+IGRLVKNGLLNKLKD SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS LCGPMNVKARGGFEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYSRYGYL
Subjt:  LDDYSRYGYL

A0A5A7VJG3 Gag/pol protein

5.3e-100

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        MTLMVGTGDVISAR VGD KLFFG KFMFLENLYIV KIKRNLV VSCLIEH+YSIN SMNEAFISKNG     AKLE+NLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI PNNNTYLWHLRL HI LD+IGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGK YRAKEPLELIHS LCGPMNVKARGGFEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYSRYGYL
Subjt:  LDDYSRYGYL

A0A5D3BNE1 Gag/pol protein

1.1e-102

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Query:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT
        M L VGTGDVISAR VGDAKLFFGNKFMFLENLYIV KIKRNLVSVSCLIEH+YSI+ SMNEAFISKNGVHICS KLE+NLYVL+PNE KAVLNHEMFRT
Subjt:  MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-
        ANTQNKRQRI  NNNTYLWHLRLGHI LD+IGRLVKNGLLNKL+DDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS LCGPMNVKA GGFEYFIS 
Subjt:  ANTQNKRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-

Query:  LDDYSRYGYL
        +DDYS YGYL
Subjt:  LDDYSRYGYL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.4e-09

32.09

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Query:  LENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHIC-SAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRICPNNNTYLWHLRLGHI--
        LE++    +   NL+SV  L E   SI    +   ISKNG+ +  ++ + NN+          V+N + + + N ++K       NN  LWH R GHI  
Subjt:  LENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHIC-SAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRICPNNNTYLWHLRLGHI--

Query:  -KLDQIGR---LVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRA--KEPLELIHSGLCGPMNVKARGGFEYF-ISLDDYSRY
         KL +I R        LLN L + S   CE CL GK  + PF     +   K PL ++HS +CGP+         YF I +D ++ Y
Subjt:  -KLDQIGR---LVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRA--KEPLELIHSGLCGPMNVKARGGFEYF-ISLDDYSRY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.3e-12

37.08

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Query:  LWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-LDDYSR
        LWH R+GH+    +  L K  L++  K  ++ PC+ CL GK  +  F     R    L+L++S +CGPM +++ GG +YF++ +DD SR
Subjt:  LWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFIS-LDDYSR

P93293 Uncharacterized mitochondrial protein AtMg00300

1.3e-07

38.67

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Query:  NNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNV
        + T LWH RL H+    +  LVK G L+  K  SL  CE C+ GK  +  F+   +  K PL+ +HS L G  +V
Subjt:  NNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00300.1 Gag-Pol-related retrotransposon family protein

9.5e-09

38.67

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Query:  NNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNV
        + T LWH RL H+    +  LVK G L+  K  SL  CE C+ GK  +  F+   +  K PL+ +HS L G  +V
Subjt:  NNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNV

Sequences

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CDS sequence

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ATGACACTCATGGTTGGAACGGGAGATGTCATTTCAGCTCGTGTAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATA
GTTCTTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATTTACTCAATTAATATTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTA
CATATTTGTTCAGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACAGCTAATACTCAAAAT
AAAAGGCAAAGAATTTGTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAAACTCGATCAGATCGGGAGATTGGTAAAGAATGGACTTCTA
AACAAGTTAAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGTAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTA
GAACTTATACATTCAGGCCTTTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTAGATGATTATTCTAGGTATGGTTATTTATAA

mRNA sequence

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Protein sequence

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MTLMVGTGDVISARVVGDAKLFFGNKFMFLENLYIVLKIKRNLVSVSCLIEHIYSINISMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQN
KRQRICPNNNTYLWHLRLGHIKLDQIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSGLCGPMNVKARGGFEYFISLDDYSRYGYL

Cmc06g0159831 (gene) of Melon (Charmono) v1.1 genome