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Cmc06g0159841 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0159841
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCMiso1.1chr06:8072876..8073130
RNA-Seq ExpressionCmc06g0159841
SyntenyCmc06g0159841
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0000428 - DNA-directed RNA polymerase complex (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9825357.1 hypothetical protein H0E87_005079 [Populus deltoides]9.3e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

YP_004841775.1 RNA polymerase beta subunit [Cucumis melo subsp. melo]9.3e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

YP_009346477.1 RNA polymerase beta subunit [Cucumis x hytivus]9.3e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

YP_010119726.1 RNA polymerase beta subunit [Hemsleya zhejiangensis]9.3e-3484.52Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERL+ EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

YP_247591.1 RNA polymerase beta subunit [Cucumis sativus]9.3e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

TrEMBL top hitse value%identityAlignment
A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta4.5e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta4.5e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

A0A218KG28 DNA-directed RNA polymerase subunit beta4.5e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

A0A249RXK2 DNA-directed RNA polymerase subunit beta4.5e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

A0A249RZI0 DNA-directed RNA polymerase subunit beta4.5e-3485.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

SwissProt top hitse value%identityAlignment
A0ZZ27 DNA-directed RNA polymerase subunit beta6.7e-3583.13Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEA
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERL+ EDI T+FHIRKYEIQT+V S GPERITNEIPHLEA
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEA

Q09MI6 DNA-directed RNA polymerase subunit beta3.9e-3583.33Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG++L DGAATVGGELALGKNILVAY+PWEGYN EDA+LISERLI  DI T+FHIRKYEIQT+V S GPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

Q2L8Z9 DNA-directed RNA polymerase subunit beta6.7e-3583.13Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEA
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERL+ EDI T+FHIRKYEIQT+V S GPERITNEIPHLEA
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEA

Q49L06 DNA-directed RNA polymerase subunit beta5.1e-3583.13Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEA
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERL+ EDI T+FHIRKYEIQT+V S GPERITNEIPHLEA
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEA

Q4VZP1 DNA-directed RNA polymerase subunit beta1.2e-3685.71Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKN+LVAY+PWEGYN EDA+LISERLI EDI T+FHIRKYEIQT+V SHGPERITNEIPHLEAR
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR

Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta1.3e-3378.57Show/hide
Query:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR
        +KKG+IL DGAATVGGELALGKNILVAY+PWEGYN EDA+LISE L+  DI T+FHIRKYEIQT+V + GPERIT EIPHLE R
Subjt:  MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAAGGGCGAATTTTAACGGATGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGAAAAAACATTTTAGTAGCTTATATTCCATGGGAAGGTTACAATTTGGA
AGATGCGATCCTAATTAGCGAGCGTTTGATATGTGAAGATATTGAGACTAATTTCCACATTCGGAAATATGAAATTCAAACTTATGTTATAAGCCACGGACCTGAAAGAA
TCACTAACGAAATACCACATCTAGAAGCCCGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAAGGGCGAATTTTAACGGATGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGAAAAAACATTTTAGTAGCTTATATTCCATGGGAAGGTTACAATTTGGA
AGATGCGATCCTAATTAGCGAGCGTTTGATATGTGAAGATATTGAGACTAATTTCCACATTCGGAAATATGAAATTCAAACTTATGTTATAAGCCACGGACCTGAAAGAA
TCACTAACGAAATACCACATCTAGAAGCCCGCTAA
Protein sequenceShow/hide protein sequence
MKKGRILTDGAATVGGELALGKNILVAYIPWEGYNLEDAILISERLICEDIETNFHIRKYEIQTYVISHGPERITNEIPHLEAR