CuGenDBv2

Gene ID	Cmc06g0160161
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Genome location	CMiso1.1chr06:8437366..8437869
RNA-Seq Expression	Cmc06g0160161
Synteny	Cmc06g0160161
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031683.1 gag-pol polyprotein [Cucumis melo var. makuwa]

1.7e-74

86.23

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Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTLFIN+T+TDLI+AQIYVDDI FGGFPKTLVNNFINIMKS+FEMSLV ELSCFLGLQIKQRSE MFISQEKYAKNLVKKFGL QS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYK+ PA TH KITKDT+GTAVD KLYRSMIGSLL+L  S P+I Y VG+C RYQSDPRTSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

KAA0054435.1 gag-pol polyprotein [Cucumis melo var. makuwa]

3.3e-75

88.02

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Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGER YSRGETDKTLFINRT+T+LI+AQIYVDDI FGGFPKTLV+NFINIMKS+FEMSLV ELSCFLGLQIKQRSE MFISQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        Q+KR PAVTHAKITKD VGT VD KLYRSMIGSLL+LTTSRP+IAY VG+CARYQSD RTSHLNA+K
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

KAA0054623.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.7e-74

87.43

Show/hide

Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTL INRT+TDLI+AQIYVDDI FGGFPKTLVNNFINIM S+FEMSLV ELSCFLGLQIKQRSE MF+SQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYKR PA THAKITKDTVGTAVD KLYRSMIGS L+L  SRP+IAY V +CARYQSDP TSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

XP_016899410.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]

3.4e-88

100

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Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

XP_016901935.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]

1.7e-74

87.43

Show/hide

Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTL INRT+TDLI+AQIYVDDI FGGFPKTLVNNFINIM S+FEMSLV ELSCFLGLQIKQRSE MF+SQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYKR PA THAKITKDTVGTAVD KLYRSMIGS L+L  SRP+IAY V +CARYQSDP TSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DUL4 uncharacterized mitochondrial protein AtMg00810-like

1.7e-88

100

Show/hide

Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

A0A1S4E1S5 uncharacterized mitochondrial protein AtMg00810-like

8.0e-75

87.43

Show/hide

Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTL INRT+TDLI+AQIYVDDI FGGFPKTLVNNFINIM S+FEMSLV ELSCFLGLQIKQRSE MF+SQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYKR PA THAKITKDTVGTAVD KLYRSMIGS L+L  SRP+IAY V +CARYQSDP TSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

A0A5A7UF87 Putative mitochondrial protein

8.0e-75

87.43

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Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTL INRT+TDLI+AQIYVDDI FGGFPKTLVNNFINIM S+FEMSLV ELSCFLGLQIKQRSE MF+SQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYKR PA THAKITKDTVGTAVD KLYRSMIGS L+L  SRP+IAY V +CARYQSDP TSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

A0A5D3BY43 Gag-pol polyprotein

8.0e-75

86.23

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Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGERGYSRGETDKTLFIN+T+TDLI+AQIYVDDI FGGFPKTLVNNFINIMKS+FEMSLV ELSCFLGLQIKQRSE MFISQEKYAKNLVKKFGL QS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        QYK+ PA TH KITKDT+GTAVD KLYRSMIGSLL+L  S P+I Y VG+C RYQSDPRTSHLNAVK
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

A0A5D3CS19 Gag-pol polyprotein

1.6e-75

88.02

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Query:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS
        MYLGER YSRGETDKTLFINRT+T+LI+AQIYVDDI FGGFPKTLV+NFINIMKS+FEMSLV ELSCFLGLQIKQRSE MFISQEKYAKNLVKKFGLDQS
Subjt:  MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQS

Query:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        Q+KR PAVTHAKITKD VGT VD KLYRSMIGSLL+LTTSRP+IAY VG+CARYQSD RTSHLNA+K
Subjt:  QYKRAPAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-13

27.27

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Query:  YLGERGYSRGETDKTLFINR-TNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQI--KQRSEDMFISQEKYAKNLVKKFGLD
        ++  + Y +  +D  ++  R +  + II  +YVDD+   G  K L+      +   F+M  +      LG++I  ++ S  +++SQEKY + ++++F + 
Subjt:  YLGERGYSRGETDKTLFINR-TNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQI--KQRSEDMFISQEKYAKNLVKKFGLD

Query:  QSQYKRAPAVTHAKITKDTVGTAVDLK------LYRSMIGSLLH-LTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
         ++    P   H K++K    T V+ K       Y S +GSL++ +  +RP+IA+ VG+ +R+  +P   H  AVK
Subjt:  QSQYKRAPAVTHAKITKDTVGTAVDLK------LYRSMIGSLLH-LTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

P92519 Uncharacterized mitochondrial protein AtMg00810

1.2e-11

30.66

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Query:  IYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQSQYKRAPAVTHAKITKDTVGTAVDLKLYRSM
        +YVDDI   G   TL+N  I  + S F M  +  +  FLG+QIK     +F+SQ KYA+ ++   G+   +    P       +  T     D   +RS+
Subjt:  IYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQSQYKRAPAVTHAKITKDTVGTAVDLKLYRSM

Query:  IGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        +G+L +LT +RP+I+Y V +  +   +P  +  + +K
Subjt:  IGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.1e-15

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Query:  GYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQSQYKRAP
        G+ +  +D T F+  T T  +   +YVDDI         V+   + +KS F++  +  L  FLGL+I + +  + I Q KYA +L+ + GL   +    P
Subjt:  GYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQSQYKRAP

Query:  AVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAV
               +  + G  VD K YR +IG L++L  +R +I++ V   +++   PR +H  AV
Subjt:  AVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAV

ATMG00810.1 DNA/RNA polymerases superfamily protein

8.6e-13

30.66

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Query:  IYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQSQYKRAPAVTHAKITKDTVGTAVDLKLYRSM
        +YVDDI   G   TL+N  I  + S F M  +  +  FLG+QIK     +F+SQ KYA+ ++   G+   +    P       +  T     D   +RS+
Subjt:  IYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQSQYKRAPAVTHAKITKDTVGTAVDLKLYRSM

Query:  IGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK
        +G+L +LT +RP+I+Y V +  +   +P  +  + +K
Subjt:  IGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

Sequences

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CDS sequence

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ATGTATCTTGGTGAAAGAGGATATTCCAGGGGTGAAACTGACAAGACACTATTTATAAATAGAACCAACACTGATCTCATCATAGCTCAAATTTATGTTGATGAC
ATCACTTTTGGTGGATTTCCTAAAACACTTGTTAATAATTTCATTAACATAATGAAGTCAAAATTCGAAATGAGCCTAGTATGCGAACTGTCTTGCTTTCTGGGG
TTGCAGATCAAACAGAGAAGTGAAGATATGTTTATATCACAAGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCAGTCACAATACAAAAGGGCT
CCAGCTGTGACTCATGCTAAAATTACCAAGGATACGGTAGGTACTGCAGTCGATCTTAAATTGTACAGAAGCATGATTGGAAGCCTCCTACATTTAACAACAAGC
AGACCTAATATTGCCTATGGTGTGGGATTATGTGCTCGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAATGA

mRNA sequence

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Protein sequence

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MYLGERGYSRGETDKTLFINRTNTDLIIAQIYVDDITFGGFPKTLVNNFINIMKSKFEMSLVCELSCFLGLQIKQRSEDMFISQEKYAKNLVKKFGLDQSQYKRA
PAVTHAKITKDTVGTAVDLKLYRSMIGSLLHLTTSRPNIAYGVGLCARYQSDPRTSHLNAVK

Cmc06g0160161 (gene) of Melon (Charmono) v1.1 genome