; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0160461 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0160461
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr06:8785241..8786164
RNA-Seq ExpressionCmc06g0160461
SyntenyCmc06g0160461
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AQY61295.1 Pol [Coffea arabica]1.4e-13275Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        +K  GKTKFCLGLQIEHL  GIF+HQ+ YT K LKRFYMDKAH L   MVVRSLD   D FRPRE+NEE+LGPEV YLSAIGA MYLAN TRP+I+F+VN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLAR+SSSP +RHWN +KH+ RYL+GTID+ LFYSNKS  +LVGYAD GYLSDPHK RSQTGYLFT GGT ISWRS KQ++AATSSNH EI+AIHE SRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNK-NLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIG
        CVWLRSMTH+IR+ CGLS  K N PTIL+EDN  CIAQ+KGGYIKGDRTKHISPK F+THDL++N +I VQQI S +NL DLFTKALPT+TFEKLV +IG
Subjt:  CVWLRSMTHHIRETCGLSFNK-NLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIG

Query:  MRRLRELK
        M+RL++LK
Subjt:  MRRLRELK

KAA0067250.1 Pol [Cucumis melo var. makuwa]3.1e-13589.96Show/hide
Query:  MDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKS
        MDKAHPL I MVVRSLDVK DIFRPREDNEELLGPEV YLSAIGA M LANNTRP+I FSVNLLARYSSSP KRHWN VKHVLRYLRGTIDMSLFYSNKS
Subjt:  MDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKS

Query:  NFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQI
        NFDLVGYAD GYLSDP K RSQ GYLFT GGT ISWRSVKQTM ATSSNH EILAIHE SRECVWLRSMTHHIRETCGLSF+KNLPTILFEDN  CIAQI
Subjt:  NFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRLRELK
        KGGYIKGDRTKH+SPKLFYTH+LEENGDISVQQISSKDNL DLFTKALPT TFEKLVHNIGM RLRELK
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRLRELK

KAF7137709.1 hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]6.9e-13576.47Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LGKTKFCLGLQIEHL +GI +HQS YTEK LK+FYMDKAHPL   MVVRSLDV  D FRP E+ E++LGPEV Y+SAIGA MYLAN TRP+I FSVN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLARYSS+P +RHW  +KH+ RYLRGTID+ LFYSN S   L+GYAD GYLSDPHK RSQTGY+FTCGG  ISWRSVKQT+ ATSSNH EI+AIHETSRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
        CVWLRSM  HIRE CGLS  K+ PTIL+EDN  CI QIKGGYIKGDRTKHISPK FYTHDL++NGDI VQQI S DNL DLFTKALPT+TF+KLV NIGM
Subjt:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Query:  RRLREL
        RRL+ L
Subjt:  RRLREL

KAF7152015.1 hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii]1.4e-13274.84Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LGKTKFCLGLQIEHL +GI +HQS YTEK LK+FYMDKAHPL   MVVRSLDV  D FRP E+ E++LGPEV Y+SAIGA MYLAN TRP+I FSVN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLARYSS+P +RHW  +KH+ RYLRGT+D+ LFYS  S   L+GYAD GYLSDPHK RSQTGY+F CGG  ISWRSVKQT+ ATSSNH EI+AIHETSRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
        CVWLRSM  HIRE CGLS  K+ PTIL+EDN  CI QIKGGYIKGDRTKHISPK FYTHDL++NGDI VQQI S DNL D+FTKALPT+TF+KLV NIGM
Subjt:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Query:  RRLREL
         RL++L
Subjt:  RRLREL

RVW59189.1 Copia protein [Vitis vinifera]2.5e-13275.16Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LGKTKFCLGLQIEH  +G+ +HQSTY +K LKRFYMDKAHPL   MVVRSLDVK D FRP E +EELLGPEV YLSAIGA MYLAN TRP+I FSVN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLARYSS+P +RHWN +KH+LRYLRGT DM LFYS +S   L+GYAD GYLSDPHK RSQTGY+F C GT ISWRSVKQTM ATSSNH EILAIHE SRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
        C+WLRSM  HIRE+CGLS  K  PT LFEDN  CIAQI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI S DNL DLFTK+LPTSTF+KL+H IGM
Subjt:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Query:  RRLREL
        R+L+++
Subjt:  RRLREL

TrEMBL top hitse value%identityAlignment
A0A2N9FE48 Reverse transcriptase Ty1/copia-type domain-containing protein6.3e-13476.8Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LGKTKFCLGLQIEHL DGI IHQSTYTEK LK F+MDKAHPL   MVVRSLDVK D FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLARYSS+P  RHWN VKHVLRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT++ATSSNH EI+AIHE SRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
        CVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+GGYIKGDR KHISPK FYTH+L+++GDI V+QI S +NL D+FTK+LPT+TF+K+VH+IGM
Subjt:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Query:  RRLREL
        RRL++L
Subjt:  RRLREL

A0A2N9GCM9 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-13477.12Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LGKTKFCLGLQIEHL DGI IHQSTYTEK LK F+MDKAHPL   MVVRSLDVK D FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLARYSS+P  RHWN VKHVLRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT++ATSSNH EI+AIHE SRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
        CVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+GGYIKGDRTKHISPK FYTH+L+++GDI V+QI S +NL D+FTK+LPT+TF+K+VH+IGM
Subjt:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Query:  RRLREL
        RRL++L
Subjt:  RRLREL

A0A2N9HZE8 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-13477.12Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LGKTKFCLGLQIEHL DGI IHQSTYTEK LK F+MDKAHPL   MVVRSLDVK D FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLARYSS+P  RHWN VKHVLRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT++ATSSNH EI+AIHE SRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
        CVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+GGYIKGDR KHISPK FYTH+L+++GDI+V+QI S +NL D+FTK+LPT+TF+K+VHNIGM
Subjt:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Query:  RRLREL
        RRL++L
Subjt:  RRLREL

A0A2N9IR78 Reverse transcriptase Ty1/copia-type domain-containing protein6.3e-13476.8Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LGKTKFCLGLQIEHL DGI IHQSTY EK LK F+MDKAHPL   MVVRSLDVK D FRP+E  EE LGPEV YLSAIGA MYLAN TRP+I FSVN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        LLARYSS+P  RHWN VKHVLRYLRGT DM LFY NKSN  LVGYAD GYLSDPHK RSQTGYLFTCG T ISWRSVKQT++ATSSNH EI+AIHE SRE
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
        CVWLRS+  HIRE CGLS  K+ PTIL+EDN  CI QI+GGYIKGDRTKHISPK FYTH+L+++GDI V+QI S +NL D+FTK+LPT+TF+K+VH+IGM
Subjt:  CVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Query:  RRLREL
        RRL++L
Subjt:  RRLREL

A0A5D3CKU4 Pol1.5e-13589.96Show/hide
Query:  MDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKS
        MDKAHPL I MVVRSLDVK DIFRPREDNEELLGPEV YLSAIGA M LANNTRP+I FSVNLLARYSSSP KRHWN VKHVLRYLRGTIDMSLFYSNKS
Subjt:  MDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKS

Query:  NFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQI
        NFDLVGYAD GYLSDP K RSQ GYLFT GGT ISWRSVKQTM ATSSNH EILAIHE SRECVWLRSMTHHIRETCGLSF+KNLPTILFEDN  CIAQI
Subjt:  NFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRLRELK
        KGGYIKGDRTKH+SPKLFYTH+LEENGDISVQQISSKDNL DLFTKALPT TFEKLVHNIGM RLRELK
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRLRELK

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.9e-3731.6Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPE----VSYLSAIGAPMYLANNTRPNIT
        M  L + K  +G++IE   D I++ QS Y +K L +F M+  + +   +             P + N ELL  +        S IG  MY+   TRP++T
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPE----VSYLSAIGAPMYLANNTRPNIT

Query:  FSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFD--LVGYADVGYLSDPHKTRSQTGYLFTC-GGTVISWRSVKQTMAATSSNHVEILA
         +VN+L+RYSS      W  +K VLRYL+GTIDM L +     F+  ++GY D  +       +S TGYLF      +I W + +Q   A SS   E +A
Subjt:  FSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFD--LVGYADVGYLSDPHKTRSQTGYLFTC-GGTVISWRSVKQTMAATSSNHVEILA

Query:  IHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEK
        + E  RE +WL+ +         ++     P  ++EDN  CI+ I        R KHI  K  +  +  +N  I ++ I +++ L D+FTK LP + F +
Subjt:  IHETSRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEK

Query:  LVHNIGM
        L   +G+
Subjt:  LVHNIGM

P0CV72 Secreted RxLR effector protein 1615.1e-2441.3Show/hide
Query:  VSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISW
        V YLSA+GA MYL   TRP++  +V +L++++S P   HW  +K VLRYL+ T    L ++      LVGY+D  +  D    RS +GYLF   G  +SW
Subjt:  VSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISW

Query:  RSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIR
        RS KQ   A SS   E +A+ E ++E VWL   T   +
Subjt:  RSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIR

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-3432.12Show/hide
Query:  MKYLGKTKFCLGLQI--EHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFS
        MK LG  +  LG++I  E  +  +++ Q  Y E+ L+RF M  A P+   +       K     P    E+    +V Y SA+G+ MY    TRP+I  +
Subjt:  MKYLGKTKFCLGLQI--EHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFS

Query:  VNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETS
        V +++R+  +P K HW  VK +LRYLRGT    L +   S+  L GY D     D    +S TGYLFT  G  ISW+S  Q   A S+   E +A  ET 
Subjt:  VNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETS

Query:  RECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNI
        +E +WL+     +    GL   +    +++ D+ + I   K       RTKHI  +  +  ++ ++  + V +IS+ +N  D+ TK +P + FE     +
Subjt:  RECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNI

Query:  GM
        GM
Subjt:  GM

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.8e-2426.78Show/hide
Query:  FCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSS
        + LG++ + +  G+ + Q  Y    L R  M  A P+   M   +   K  ++       +L  P   Y   +G+  YLA  TRP+I+++VN L+++   
Subjt:  FCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSS

Query:  PKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMT
        P + H   +K +LRYL GT +  +F    +   L  Y+D  +  D     S  GY+   G   ISW S KQ     SS   E  ++  TS E  W+ S+ 
Subjt:  PKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMT

Query:  HHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRL
                L      P +++ DN+     +    +   R KHI+    +  +  ++G + V  +S+ D L D  TK L  + F+     IG+ R+
Subjt:  HHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.4e-2727.74Show/hide
Query:  FCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSS
        + LG++ + +  G+ + Q  YT   L R  M  A P+   M            +    +   L     Y   +G+  YLA  TRP+++++VN L++Y   
Subjt:  FCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSS

Query:  PKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMT
        P   HWN +K VLRYL GT D  +F    +   L  Y+D  +  D     S  GY+   G   ISW S KQ     SS   E  ++  TS E  W+ S+ 
Subjt:  PKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMT

Query:  HHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM
                L    + P +++ DN+     +    +   R KHI+    +  +  ++G + V  +S+ D L D  TK L    F+     IG+
Subjt:  HHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGM

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.8e-2429.21Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISM---VVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITF
        ++ LG  K+ LGL+I   A GI I Q  Y    L    +    P  + M   V  S     D    +           +Y   IG  MYL   TR +I+F
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISM---VVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITF

Query:  SVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHET
        +VN L+++S +P+  H   V  +L Y++GT+   LFYS+++   L  ++D  + S     RS  GY    G ++ISW+S KQ + + SS   E  A+   
Subjt:  SVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHET

Query:  SRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENG------DISVQQISSKDNLTDLFTKALPTSTF
        + E +WL      ++    L  +K  PT+LF DN T    I    +  +RTKHI       H + E          S Q    +D  T+  +  L   T 
Subjt:  SRECVWLRSMTHHIRETCGLSFNKNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENG------DISVQQISSKDNLTDLFTKALPTSTF

Query:  EKLVHNIGMRRLREL
          +V   G+  L  L
Subjt:  EKLVHNIGMRRLREL

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.3e-1041.77Show/hide
Query:  MYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGY
        MYL   TRP++TF+VN L+++SS+ +      V  VL Y++GT+   LFYS  S+  L  +AD  + S P   RS TG+
Subjt:  MYLANNTRPNITFSVNLLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGY

ATMG00810.1 DNA/RNA polymerases superfamily protein7.3e-1827.59Show/hide
Query:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN
        MK LG   + LG+QI+    G+F+ Q+ Y E+ L    M    P+   +    L + + +   +  +         + S +GA  YL   TRP+I+++VN
Subjt:  MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVN

Query:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE
        ++ +    P    ++ +K VLRY++GTI   L+    S  ++  + D  +       RS TG+    G  +ISW + +Q   + SS   E  A+  T+ E
Subjt:  LLARYSSSPKKRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRE

Query:  CVW
          W
Subjt:  CVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAAAATTTAAAAAGATT
CTACATGGACAAAGCACACCCATTGAAAATTTCAATGGTGGTTCGATCATTAGATGTAAAAAATGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTG
AAGTATCGTACCTTAGTGCAATAGGTGCACCAATGTATCTTGCTAATAACACAAGACCAAATATAACATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAAAA
AAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATTTAGTTGGTTATGCAGA
TGTTGGATATTTATCTGATCCACACAAAACAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGCAAACCATGGCGGCCA
CTTCATCGAATCATGTAGAAATTCTTGCAATTCATGAAACTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAAT
AAAAATTTACCAACAATATTATTTGAAGATAATATCACATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACCAAAACTCTTCTA
TACGCATGACCTTGAAGAAAATGGTGACATTAGTGTTCAACAAATTTCTTCAAAAGACAACTTGACAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGC
TAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAAAATTTAAAAAGATT
CTACATGGACAAAGCACACCCATTGAAAATTTCAATGGTGGTTCGATCATTAGATGTAAAAAATGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTG
AAGTATCGTACCTTAGTGCAATAGGTGCACCAATGTATCTTGCTAATAACACAAGACCAAATATAACATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAAAA
AAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATTTAGTTGGTTATGCAGA
TGTTGGATATTTATCTGATCCACACAAAACAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGCAAACCATGGCGGCCA
CTTCATCGAATCATGTAGAAATTCTTGCAATTCATGAAACTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAAT
AAAAATTTACCAACAATATTATTTGAAGATAATATCACATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACCAAAACTCTTCTA
TACGCATGACCTTGAAGAAAATGGTGACATTAGTGTTCAACAAATTTCTTCAAAAGACAACTTGACAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGC
TAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA
Protein sequenceShow/hide protein sequence
MKYLGKTKFCLGLQIEHLADGIFIHQSTYTEKNLKRFYMDKAHPLKISMVVRSLDVKNDIFRPREDNEELLGPEVSYLSAIGAPMYLANNTRPNITFSVNLLARYSSSPK
KRHWNEVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKTRSQTGYLFTCGGTVISWRSVKQTMAATSSNHVEILAIHETSRECVWLRSMTHHIRETCGLSFN
KNLPTILFEDNITCIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLTDLFTKALPTSTFEKLVHNIGMRRLRELK