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Cmc06g0160551 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0160551
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionprotein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1
Genome locationCMiso1.1chr06:8868005..8870410
RNA-Seq ExpressionCmc06g0160551
SyntenyCmc06g0160551
Gene Ontology termsGO:0042793 - plastid transcription (biological process)
GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR038958 - Protein plastid transcriptionally active 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050522.1 KH domain-containing protein [Cucumis melo var. makuwa]9.2e-89100Show/hide
Query:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_004146231.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucumis sativus]3.3e-8697.04Show/hide
Query:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_008455984.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucumis melo]9.2e-89100Show/hide
Query:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_016901917.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2 [Cucumis melo]1.1e-81100Show/hide
Query:  FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_038891427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Benincasa hispida]2.2e-8293.49Show/hide
Query:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        M+TPISTLSFASP LP RIE  PRISPA NFR PFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPH+LKQE+T
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
TrEMBL top hitse value%identityAlignment
A0A0A0L9J8 Uncharacterized protein1.6e-8697.04Show/hide
Query:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A1S3C3E7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X14.4e-89100Show/hide
Query:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A1S4E109 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X25.2e-82100Show/hide
Query:  FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A5A7U3Y9 KH domain-containing protein4.4e-89100Show/hide
Query:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A5D3CIV3 KH domain-containing protein4.4e-8199.36Show/hide
Query:  FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRIS ALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
SwissProt top hitse value%identityAlignment
Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 74.0e-4767.14Show/hide
Query:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSK
Subjt:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Arabidopsis top hitse value%identityAlignment
AT5G24314.1 plastid transcriptionally active72.9e-4867.14Show/hide
Query:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSK
Subjt:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
AT5G24314.2 plastid transcriptionally active74.6e-4663.51Show/hide
Query:  NFRPPFQVVARKQRNGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN
        N R  FQ         + +GRRVWRRR         LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ N
Subjt:  NFRPPFQVVARKQRNGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN

Query:  RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        RDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTCCAATCTCAACACTCTCCTTTGCTTCCCCTTTTTTGCCGCTCAGGATTGAGGCGAATCCCAGAATTTCTCCTGCCTTGAACTTCCGTCCCCCGTTT
CAGGTGGTCGCTAGAAAACAGAGAAATGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACAAAGAAGGATGACATGTCGATCTACAAAATGGAT
CGAATCCCATTCCTTGAAGAACAGGTAAGGAGGGTAAAGGAACAGGGAAAGCTCATCACAATGGACATTGAAAGACTATTATTATCAGAGGACAACCGCTTTGAT
TTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTCAGCAACCGTGTG
AACGATGCAGGGTTTTATAGGCCAGATGCTTATGCTGAAGATGACCCATTTAAACCGGGACCTCATTATCTGAAACAAGAATTTACTTGA
mRNA sequenceShow/hide mRNA sequence
TCTCCTAACTTAGAGGACAGTTTTCAAAACGAGAGTTTTGGGAGAGCTCGCGTGTATCTACTCGAAAGTAATAATATCATTCGAAAATGAAGATAGGACAGCCAT
GGCCACTCCAATCTCAACACTCTCCTTTGCTTCCCCTTTTTTGCCGCTCAGGATTGAGGCGAATCCCAGAATTTCTCCTGCCTTGAACTTCCGTCCCCCGTTTCA
GGTGGTCGCTAGAAAACAGAGAAATGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACAAAGAAGGATGACATGTCGATCTACAAAATGGATCG
AATCCCATTCCTTGAAGAACAGGTAAGGAGGGTAAAGGAACAGGGAAAGCTCATCACAATGGACATTGAAAGACTATTATTATCAGAGGACAACCGCTTTGATTT
TGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTCAGCAACCGTGTGAA
CGATGCAGGGTTTTATAGGCCAGATGCTTATGCTGAAGATGACCCATTTAAACCGGGACCTCATTATCTGAAACAAGAATTTACTTGAACAATTTGATTACAAAA
TCCATTTTCTTATACAGACTGTCAATGCATTAATCTGATTTTTCCAGTCTTTAAATGTTAGTGCCTTTGTCTCTTCTGATTAAGAATTGCGCTTGCCTCATGAGT
TTTTTTCTAACCAAATATAGCTCTTTAAACTGCTACTTTTCTATTCGTTATGTTTCCATCCAACATTCCCAAAAGGAGGGAAGATTATTATCGACAAACTTCTGA
AACCATTAGAAAGTTGCTT
Protein sequenceShow/hide protein sequence
MATPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFD
FVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT