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Cmc06g0160821 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0160821
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr06:9172038..9175506
RNA-Seq ExpressionCmc06g0160821
SyntenyCmc06g0160821
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033940.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-2162.11Show/hide
Query:  NVEIVNVIRDAIECANDQ---LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA
        N+EI  +    +  +++    LR I EWPKLAMQ+E ATR EVIRQL  I EL+ LD+A C+RKL QNLADMKAFL +PEEMKMDYC +ILQDDA
Subjt:  NVEIVNVIRDAIECANDQ---LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA

KAA0056591.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-2168.29Show/hide
Query:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD
        NVE + VIRDA+ECANDQLR IA+W KLAMQDED TR +VIRQL+ IPELS LDRARC++ +   L +MKAFL + E+MKMD
Subjt:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD

KAA0058838.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-57100Show/hide
Query:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
        MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
Subjt:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD

Query:  MKAFLVVPEEMKMDYCKVILQDDA
        MKAFLVVPEEMKMDYCKVILQDDA
Subjt:  MKAFLVVPEEMKMDYCKVILQDDA

KAA0065892.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1755.81Show/hide
Query:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD
        +++R AIE  N+QL  IAEWP L  QD   TR E++RQL VIPEL+ +DR R +R LM+N+ DMKAFL VP+ MK  YC +ILQ++
Subjt:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]1.8e-1753.33Show/hide
Query:  ENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQ
        + +E  +VI+DA+    D+LR IAEWP+LA++DE   R EV+R LR IPELS LD A+C R LM NL DMK FL +  E K+DYC V+++
Subjt:  ENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQ

TrEMBL top hitse value%identityAlignment
A0A5A7SSK8 Retrotransposon protein1.3e-2162.11Show/hide
Query:  NVEIVNVIRDAIECANDQ---LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA
        N+EI  +    +  +++    LR I EWPKLAMQ+E ATR EVIRQL  I EL+ LD+A C+RKL QNLADMKAFL +PEEMKMDYC +ILQDDA
Subjt:  NVEIVNVIRDAIECANDQ---LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA

A0A5A7U8U9 Retrotransposon protein1.5e-1754.65Show/hide
Query:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD
        +++R AIE  N+QL  IAEWP L +QD   TR E++RQL  IPEL+ +DR R +R LM+N+ DMKAFL VP+ MK  YC +ILQ++
Subjt:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD

A0A5A7USV9 Retrotransposon protein2.9e-2168.29Show/hide
Query:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD
        NVE + VIRDA+ECANDQLR IA+W KLAMQDED TR +VIRQL+ IPELS LDRARC++ +   L +MKAFL + E+MKMD
Subjt:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD

A0A5A7UUF7 Retrotransposon protein5.1e-58100Show/hide
Query:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
        MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
Subjt:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD

Query:  MKAFLVVPEEMKMDYCKVILQDDA
        MKAFLVVPEEMKMDYCKVILQDDA
Subjt:  MKAFLVVPEEMKMDYCKVILQDDA

A0A5A7VC47 Retrotransposon protein1.1e-1755.81Show/hide
Query:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD
        +++R AIE  N+QL  IAEWP L  QD   TR E++RQL VIPEL+ +DR R +R LM+N+ DMKAFL VP+ MK  YC +ILQ++
Subjt:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAA
ATTGTGAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTG
GAAGTCATTAGACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTG
GTCGTACCCGAGGAGATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA
mRNA sequenceShow/hide mRNA sequence
TTTTTTATTAAAGTAAAAAAAAAAAAAAAGATATTTTCTTCTTCTCTCTTCTTCTCCTTCCCCATTCTTCTAGAAACGTGGACTGCTCCCTCCGGTTGAAATTTC
TCATCCGCTAACCAACACTCCATCTCTAACTCTCCTCCGGTGCCGGAACGACGCCACATTCAGTAACCGTGTGCCACATCTCTCTCACTCCTTCCCGTCGACGGT
ACGTCCAACATATCTCCTTTTCTCTCCTCCAGCCGACACCACAACCCCGACCGCCGCTACGCCACTCGAATCGCGAGACAACGACCACCCCACGCCGCAATGCTG
CTATCCACGGTGTTTTTGAAGCCGTCAGACTTGATCGGCACAATCTGTTTGTGTTTCCTGGTTAGCCGAGCTGTGCATCACTTAACCATCTTCCGCCATTATTAG
CAAGTCGAATAGCCGCTAACCTAGTTCTTTTCCAACTCCAGGTTGAAATTTCGGGGCCACATTGAATTAGGGAAAGGGCATCTGGGGGATCGAGTCACTAATAGT
AGCGGTTAAGGACCAAGTTTGATTGAGCTCTCCATCACCTTTGTAGAATTTCCATTTTGTTGTTAGTCGTTACCTTGCAATGGCCTCAGAAAACATTGTTACAAT
ACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGTGAATGTCATTCGTGATGCCAT
AGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTAGACAGTTGCGGGTTAT
TCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAGATGAAGATGGA
CTACTGTAAGGTCATTCTACAAGATGACGCGTGATTGTTTGTCCTATTCCATTGCTTGTCTCGTATTTTTTGTTGTTGCATTATGTTTCCTGTATTTGAATTTAG
TTTATAACTCCCTTGCACCCATCTTTTTTCATTTAGATTTCTTTAGGTACAAAGGAAATTATGTTTTCAGTACTTTGTATTTTTAATTTTTATATACACGTATTT
AAATTTTTATGAATTGCACATGACATTCATAAAAATCGATTTATTGAAACATAACATTATT
Protein sequenceShow/hide protein sequence
MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFL
VVPEEMKMDYCKVILQDDA