CuGenDBv2

Gene ID	Cmc06g0160991
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	S4 RNA-binding domain-containing protein
Genome location	CMiso1.1chr06:9333922..9339973
RNA-Seq Expression	Cmc06g0160991
Synteny	Cmc06g0160991
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

8.8e-105

95.35

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTALEYEPPK    TKTFKTIEASLRVDA+ASAGFKISRSKLVDLI SGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKFAVELIRYV
Subjt:  STKKGKFAVELIRYV

XP_008456024.1 PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]

7.2e-107

97.67

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTALEYEPPK    TKTFKTIEASLRVDALASAGFKISRSKLVDLI SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKFAVELIRYV
Subjt:  STKKGKFAVELIRYV

XP_016901905.1 PREDICTED: putative RNA-binding protein YlmH isoform X1 [Cucumis melo]

7.2e-107

97.67

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTALEYEPPK    TKTFKTIEASLRVDALASAGFKISRSKLVDLI SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKFAVELIRYV
Subjt:  STKKGKFAVELIRYV

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

2.4e-102

92.09

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Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+VPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTAL+YEPPK    TKTF TIEASLRVDA+ASAGFKISRSKLVDLI SGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKF+VELIRYV
Subjt:  STKKGKFAVELIRYV

XP_022142745.1 uncharacterized protein LOC111012786 isoform X2 [Momordica charantia]

9.8e-104

92.52

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+VPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLISGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINS
        LRKVGNVTVSCTRIPLTAL+YEPPK    TKTF TIEASLRVDA+ASAGFKISRSKLVDLISGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIGEINS
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLISGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINS

Query:  TKKGKFAVELIRYV
        TKKGKF+VELIRYV
Subjt:  TKKGKFAVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

4.3e-105

95.35

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTALEYEPPK    TKTFKTIEASLRVDA+ASAGFKISRSKLVDLI SGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKFAVELIRYV
Subjt:  STKKGKFAVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

3.5e-107

97.67

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTALEYEPPK    TKTFKTIEASLRVDALASAGFKISRSKLVDLI SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKFAVELIRYV
Subjt:  STKKGKFAVELIRYV

A0A1S4E1P4 putative RNA-binding protein YlmH isoform X1

3.5e-107

97.67

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTALEYEPPK    TKTFKTIEASLRVDALASAGFKISRSKLVDLI SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKFAVELIRYV
Subjt:  STKKGKFAVELIRYV

A0A6J1CLT4 uncharacterized protein LOC111012786 isoform X2

4.7e-104

92.52

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+VPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLISGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINS
        LRKVGNVTVSCTRIPLTAL+YEPPK    TKTF TIEASLRVDA+ASAGFKISRSKLVDLISGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIGEINS
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLISGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINS

Query:  TKKGKFAVELIRYV
        TKKGKF+VELIRYV
Subjt:  TKKGKFAVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

1.2e-102

92.09

Show/hide

Query:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS
        MLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+VPELVDFLISS
Subjt:  MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISS

Query:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN
        LRKVGNVTVSCTRIPLTAL+YEPPK    TKTF TIEASLRVDA+ASAGFKISRSKLVDLI SGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIGEIN
Subjt:  LRKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN

Query:  STKKGKFAVELIRYV
        STKKGKF+VELIRYV
Subjt:  STKKGKFAVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

3.2e-17

30.99

Show/hide

Query:  AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSL
        A+   ADV     GGY  AER R  +        + D  + A ++     F    H   LG+++G G+ R+K GDI+   ET  Q+++  +  DF+ + L
Subjt:  AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSL

Query:  RKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEI-N
         + G   VS  +I L+ L       E    T     +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+ G GR  + +I  
Subjt:  RKVGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLI-SGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEI-N

Query:  STKKGKFAVELIR
         TKK K+ V   R
Subjt:  STKKGKFAVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

1.2e-91

77.83

Show/hide

Query:  IQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRK
        ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI+IQEE GAQV+IVPELVDF++++L K
Subjt:  IQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRK

Query:  VGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLISG-DVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINSTK
        VGNV V+C++IPL ALEYEPP+    T +FKT+EASLR+DA+ASAGFKISRSKLVDLIS  DVRVNW  +TKNGTI+KTGD+VSVSGKGRLKIGEIN TK
Subjt:  VGNVTVSCTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLISG-DVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINSTK

Query:  KGKFAVELIRYV
        KGKFAVE+IRY+
Subjt:  KGKFAVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGA
TCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGC
TTGGTGATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCT
TGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGTATGAGTTTATGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAG
TGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATA
TTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAA

mRNA sequence

Show/hide mRNA sequence

TCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAG
TGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAA
AGCTTGGTGATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTT
TCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGTATGAGTTTATGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGC
AAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTG
ATATTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAAGCTCTAGAGATA
CTGTCAGTTCATAAGACGTC

Protein sequence

Show/hide protein sequence

MLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVS
CTRIPLTALEYEPPKYEFMTKTFKTIEASLRVDALASAGFKISRSKLVDLISGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV

Cmc06g0160991 (gene) of Melon (Charmono) v1.1 genome