CuGenDBv2

Gene ID	Cmc06g0161191
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr06:9593303..9594325
RNA-Seq Expression	Cmc06g0161191
Synteny	Cmc06g0161191
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004601 - peroxidase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0038941.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]

1.6e-193

100

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMK
        ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMK
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMK

KAA0062279.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

5.4e-173

88.43

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M+DKDIPKTAFR HEGHYEFLV+PFGLTNAP TFQALMN+IFRPF RKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H LFANKKKCNFGQKK+EYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHI+SGEGVEVDSEKIKAVADWPCPTNI+EVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPN  LPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVL+QSKRPIAFYSHT SMRDR RPVYER+LMAVVLSVQRWRPYLL AKF+VKTDQKSLKFLLEQRVIQPQY+KWLSKLLGYSFEVVYK  L
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK
        ENKAADALSRRPP+IQLN+IS PYL+DL+ IK+  +K
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK

TYK02195.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.9e-173

89.02

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M+DKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPF RKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQKK+EYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIKAVADWPCPTNI+EV+GFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPN  LPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVL+QSKRPIAFYSHT SMRDR RPVYERELMAVVLSVQRWRPYLL AKF+VKTDQKSLKFLLEQRVIQPQY+KWLSKLLGYSFEVVYK  L
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK
        ENKAADALSRRPP+IQLN+IS PY +DL+ IK+  +K
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK

TYK11209.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

4.3e-194

100

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMKS
        ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMKS
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMKS

TYK23779.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-173

88.72

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M+DKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPF RKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQKK+EYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIK VADWPCPTNI+EV+GFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPN  LPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVL+QSKRPIAFYSHT SMRDR RPVYERELMAVVLSVQRWRPYLL AKF+VKTDQKSLKFLLEQRVIQPQY+KWLSKLLGYSFEVVYK  L
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK
        ENKAADALSRRPP+IQLN+IS PY +DL+ IK+  +K
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TBE6 Transposon Tf2-9 polyprotein

7.8e-194

100

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMK
        ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMK
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMK

A0A5A7V9B4 Transposon Tf2-6 polyprotein

2.6e-173

88.43

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M+DKDIPKTAFR HEGHYEFLV+PFGLTNAP TFQALMN+IFRPF RKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H LFANKKKCNFGQKK+EYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHI+SGEGVEVDSEKIKAVADWPCPTNI+EVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPN  LPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVL+QSKRPIAFYSHT SMRDR RPVYER+LMAVVLSVQRWRPYLL AKF+VKTDQKSLKFLLEQRVIQPQY+KWLSKLLGYSFEVVYK  L
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK
        ENKAADALSRRPP+IQLN+IS PYL+DL+ IK+  +K
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK

A0A5D3BSP2 Ty3/gypsy retrotransposon protein

9.0e-174

89.02

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M+DKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPF RKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQKK+EYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIKAVADWPCPTNI+EV+GFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPN  LPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVL+QSKRPIAFYSHT SMRDR RPVYERELMAVVLSVQRWRPYLL AKF+VKTDQKSLKFLLEQRVIQPQY+KWLSKLLGYSFEVVYK  L
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK
        ENKAADALSRRPP+IQLN+IS PY +DL+ IK+  +K
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK

A0A5D3CLW4 Transposon Tf2-6 polyprotein

2.1e-194

100

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMKS
        ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMKS
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKKMKS

A0A5D3DKH5 Ty3/gypsy retrotransposon protein

2.6e-173

88.72

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M+DKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPF RKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQKK+EYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        GHIISGEGVEVDSEKIK VADWPCPTNI+EV+GFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPN  LPFEIET
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL
        DASGFGVGAVL+QSKRPIAFYSHT SMRDR RPVYERELMAVVLSVQRWRPYLL AKF+VKTDQKSLKFLLEQRVIQPQY+KWLSKLLGYSFEVVYK  L
Subjt:  DASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDL

Query:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK
        ENKAADALSRRPP+IQLN+IS PY +DL+ IK+  +K
Subjt:  ENKAADALSRRPPNIQLNTISAPYLVDLQVIKKRWKK

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.1e-59

38.78

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M  + + KTAF T  GHYE+L MPFGL NAP TFQ  MN+I RP   K  LV+ DDI+++S +  +H++ +  VF  L +  L     KC F +++  +L
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGG--FKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEI
        GH+++ +G++ + EKI+A+  +P PT  KE++ FLGLTGYYR+F+ ++  IA P+T+ LKK       N E + AF KLK  +   P L +P+    F +
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGG--FKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEI

Query:  ETDASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKL
         TDAS   +GAVL Q   P+++ S T +  +      E+EL+A+V + + +R YLL   F + +D + L +L   +    +  +W  KL  + F++ Y  
Subjt:  ETDASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKL

Query:  DLENKAADALSR
          EN  ADALSR
Subjt:  DLENKAADALSR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

9.9e-53

35.54

Show/hide

Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        + + D  KT+F  + G YEF  +PFGL NA   FQ  ++++ R    K   V+ DD++I+S+NE DHV HI+ V   L    +  +++K  F ++ +EYL
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLL------------KKGGFKWNEESEKAFLKLKSAMMSLPT-L
        G I+S +G + D EK+KA+ ++P P  + +V+ FLGL  YYR F++ + +IA P+T +L            KK   ++NE    AF +L++ + S    L
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLL------------KKGGFKWNEESEKAFLKLKSAMMSLPT-L

Query:  ALPNVELPFEIETDASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFI-VKTDQKSLKFLLEQRVIQPQYKKWLSK
          P+ + PF++ TDAS  G+GAVL Q  RPI   S T    ++     EREL+A+V ++ + + +L  ++ I + TD + L F +  R    + K+W S 
Subjt:  ALPNVELPFEIETDASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFI-VKTDQKSLKFLLEQRVIQPQYKKWLSK

Query:  LLGYSFEVVYKLDLENKAADALSRRPPNIQLN
        +  ++ +V YK   EN  ADALSR+  N   N
Subjt:  LLGYSFEVVYKLDLENKAADALSRRPPNIQLN

P20825 Retrovirus-related Pol polyprotein from transposon 297

5.6e-64

41.67

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Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M ++ I KTAF T  GHYE+L MPFGL NAP TFQ  MNNI RP   K  LV+ DDI+I+S +  +H+  I+ VF  L    L     KC F +K+  +L
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESE--KAFLKLKSAMMSLPTLALPNVELPFEI
        GHI++ +G++ +  K+KA+  +P PT  KE++ FLGLTGYYR+F+ +Y  IA P+T  LKK      ++ E  +AF KLK+ ++  P L LP+ E  F +
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESE--KAFLKLKSAMMSLPTLALPNVELPFEI

Query:  ETDASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKL
         TDAS   +GAVL Q+  PI+F S T +  +      E+EL+A+V + + +R YLL  +F++ +D + L++L   +    + ++W  +L  Y F++ Y  
Subjt:  ETDASGFGVGAVLVQSKRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKL

Query:  DLENKAADALSR
          EN  ADALSR
Subjt:  DLENKAADALSR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.3e-49

36.91

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Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M  KD  KTAF T  G YE+ VMPFGL NAP TF   M + FR    +FV V+ DDILI+S++ ++H +H++ V   L+   L   KKKC F  ++ E+L
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET
        G+ I  + +     K  A+ D+P P  +K+ Q FLG+  YYRRF+ +   IA P+ QL      +W E+ +KA  KLK+A+ + P L   N +  + + T
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIET

Query:  DASGFGVGAVL--VQSKRP----IAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAK-FIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFE
        DAS  G+GAVL  V +K      + ++S +     +  P  E EL+ ++ ++  +R Y+L  K F ++TD  SL  L  +     + ++WL  L  Y F 
Subjt:  DASGFGVGAVL--VQSKRP----IAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAK-FIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFE

Query:  VVYKLDLENKAADALSR
        + Y    +N  ADA+SR
Subjt:  VVYKLDLENKAADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

2.4e-59

37.57

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Query:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL
        M + DIPKTAF T  G YEFL +PFGL NAP  FQ ++++I R    K   V+ DDI+++S++   H +++  V  +L +  L  N +K +F   ++E+L
Subjt:  MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYL

Query:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLK------------KGGFKWNEESEKAFLKLKSAMMSLPTLA
        G+I++ +G++ D +K++A+++ P PT++KE++ FLG+T YYR+F+Q Y  +A PLT L +            K     +E + ++F  LKS + S   LA
Subjt:  GHIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLK------------KGGFKWNEESEKAFLKLKSAMMSLPTLA

Query:  LPNVELPFEIETDASGFGVGAVLVQS----KRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFI-VKTDQKSLKFLLEQRVIQPQYKKW
         P    PF + TDAS + +GAVL Q      RPIA+ S + +  +      E+E++A++ S+   R YL  A  I V TD + L F L  R    + K+W
Subjt:  LPNVELPFEIETDASGFGVGAVLVQS----KRPIAFYSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFI-VKTDQKSLKFLLEQRVIQPQYKKW

Query:  LSKLLGYSFEVVYKLDLENKAADALSRRPPNIQLNTIS
         +++  Y+ E++YK    N  ADALSR PP  QLN +S
Subjt:  LSKLLGYSFEVVYKLDLENKAADALSRRPPNIQLNTIS

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.3e-36

54.2

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Query:  VEHIEKVFLTLRRHALFANKKKCNFGQKKIEYLG--HIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK
        + H+  V     +H  +AN+KKC FGQ +I YLG  HIISGEGV  D  K++A+  WP P N  E++GFLGLTGYYRRFV++YG I  PLT+LLKK   K
Subjt:  VEHIEKVFLTLRRHALFANKKKCNFGQKKIEYLG--HIISGEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK

Query:  WNEESEKAFLKLKSAMMSLPTLALPNVELPF
        W E +  AF  LK A+ +LP LALP+++LPF
Subjt:  WNEESEKAFLKLKSAMMSLPTLALPNVELPF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTGACAAAGATATCCCAAAAACGGCTTTTCGCACTCATGAAGGTCATTACGAGTTTCTTGTTATGCCGTTTGGATTAACCAACGCCCCACCCACTTTTCAAGCCTT
GATGAACAACATCTTTAGACCATTTTTTAGAAAATTTGTTTTGGTCTTCTTCGATGATATCCTGATCTACAGCAAGAATGAGAAAGACCACGTAGAACATATTGAAAAGG
TTTTCCTCACATTGAGAAGACATGCCCTATTTGCCAATAAAAAAAAGTGTAATTTTGGCCAGAAGAAGATTGAATACTTGGGGCACATCATATCAGGGGAAGGAGTAGAA
GTAGATTCTGAAAAAATCAAAGCAGTTGCGGATTGGCCATGCCCAACAAACATAAAAGAAGTACAGGGATTCCTTGGATTAACAGGCTATTATAGGAGGTTCGTCCAACA
TTATGGGTCAATAGCTGCCCCTTTAACTCAACTCCTCAAAAAGGGTGGGTTTAAATGGAATGAAGAATCTGAAAAAGCGTTTCTAAAATTGAAATCTGCAATGATGTCCC
TACCAACATTGGCTTTACCCAACGTTGAACTTCCCTTTGAAATAGAAACAGATGCGTCCGGTTTTGGAGTGGGAGCCGTGTTAGTTCAGTCAAAGAGACCCATTGCCTTC
TATAGCCATACATTTTCCATGAGAGATAGAGTTCGGCCTGTATACGAACGCGAGTTGATGGCTGTTGTACTATCCGTACAAAGATGGAGACCATATCTACTTAGGGCAAA
ATTTATTGTAAAAACAGATCAGAAATCACTAAAATTCTTGCTGGAGCAGAGGGTTATCCAACCACAATATAAAAAATGGCTATCTAAATTACTTGGATATTCGTTTGAAG
TGGTTTATAAACTAGACTTAGAAAATAAGGCAGCCGATGCCTTATCGAGAAGACCTCCAAACATACAATTAAACACCATATCAGCCCCATATTTGGTGGATTTGCAAGTC
ATAAAGAAGAGGTGGAAAAAGATGAAAAGTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPFFRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYLGHIISGEGVE
VDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNVELPFEIETDASGFGVGAVLVQSKRPIAF
YSHTFSMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLSKLLGYSFEVVYKLDLENKAADALSRRPPNIQLNTISAPYLVDLQV
IKKRWKKMKS

Cmc06g0161191 (gene) of Melon (Charmono) v1.1 genome