| GenBank top hits | e value | %identity | Alignment |
|---|
| RVW13569.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.3e-84 | 73.91 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEGY N PICPC+FIKKS++GFAIIAVYVDDLN++GTPEEL++ YLKKEFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
H + +L
Subjt: HLVDEIL
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| RVW50867.1 Copia protein [Vitis vinifera] | 1.8e-84 | 73.91 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEGY N PICPC+FIKKS++GFAIIAVYVDDLN++GTPEEL++ YLKKEFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
H + +L
Subjt: HLVDEIL
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| RVW59049.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.8e-84 | 73.91 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEGY N PICPC+FIKKS++GFAIIAVYVDDLN++GTPEEL++ YLKKEFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
H + +L
Subjt: HLVDEIL
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| RVW71587.1 Copia protein [Vitis vinifera] | 1.8e-84 | 73.91 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEGY N PICPC+FIKKS++GFAIIAVYVDDLN++GTPEEL++ YLKKEFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
H + +L
Subjt: HLVDEIL
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| RVW89885.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.8e-84 | 73.91 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEGY N PICPC+FIKKS++GFAIIAVYVDDLN++GTPEEL++ YLKKEFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
H + +L
Subjt: HLVDEIL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2N9FGC6 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.7e-88 | 77.78 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+ NE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V +NLDM LMDVVTAYLYGSL+N+IYMKI EG+K+ E+YNS S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEG++N PICPCVFIKKS+SGFAI+AVYVDDLN++GTPEEL+K +YLK EFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
HL D IL
Subjt: HLVDEIL
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| A0A2N9G9W6 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.7e-88 | 77.78 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+ NE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V +NLDM LMDVVTAYLYGSL+N+IYMKI EG+K+ E+YNS S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEG++N PICPCVFIKKS+SGFAI+AVYVDDLN++GTPEEL+K +YLK EFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
HL D IL
Subjt: HLVDEIL
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| A0A2N9GX57 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.7e-88 | 77.78 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+ NE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V +NLDM LMDVVTAYLYGSL+N+IYMKI EG+K+ E+YNS S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEG++N PICPCVFIKKS+SGFAI+AVYVDDLN++GTPEEL+K +YLK EFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
HL D IL
Subjt: HLVDEIL
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| A0A2N9I099 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.7e-88 | 77.78 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+ NE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V +NLDM LMDVVTAYLYGSL+N+IYMKI EG+K+ E+YNS S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEG++N PICPCVFIKKS+SGFAI+AVYVDDLN++GTPEEL+K +YLK EFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
HL D IL
Subjt: HLVDEIL
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| A0A2N9J4G7 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.7e-88 | 77.78 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+ NE+ RYKARL AQGFSQRPGIDYEETYSPV+DAIT ++LISL V +NLDM LMDVVTAYLYGSL+N+IYMKI EG+K+ E+YNS S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
R + SIKLQR LYGLKQSGRMWYNRL++YL KEG++N PICPCVFIKKS+SGFAI+AVYVDDLN++GTPEEL+K +YLK EFEMKDLGKTKF L LQIE
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEIL
HL D IL
Subjt: HLVDEIL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 8.3e-29 | 36.41 | Show/hide |
Query: KWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSREL
+WVF K N+ RYKARL A+GF+Q+ IDYEET++PV + ++++SL + NL +H MDV TA+L G+L+ EIYM++ +G + +S +
Subjt: KWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSREL
Query: CSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFI--KKSQSGFAIIAVYVDDLNI-IGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
C KL + +YGLKQ+ R W+ L + + N + C++I K + + + +YVDD+ I G ++ YL ++F M DL + K F+ ++IE
Subjt: CSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFI--KKSQSGFAIIAVYVDDLNI-IGTPEELSKAIEYLKKEFEMKDLGKTKFFLDLQIE
Query: HLVDEI
D+I
Subjt: HLVDEI
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| P0C2J7 Transposon Ty4-H Gag-Pol polyprotein | 6.4e-13 | 31.22 | Show/hide |
Query: VFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPV----VDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSR
+F +KRN YKAR+ +G +Q P +TYS + ++ +K + + +N+ M +D+ A+LY LE EIY+
Subjt: VFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPV----VDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSR
Query: ELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEE-LSKAIEYLKKEFEMKDLG
C +KL + LYGLKQS + W + L YL G ++ P ++ +++ +IAVYVDD I + E+ L + I LK FE+K G
Subjt: ELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEE-LSKAIEYLKKEFEMKDLG
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.5e-33 | 38.89 | Show/hide |
Query: KWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSREL
KWVF K++ + ++ RYKARL +GF Q+ GID++E +SPVV +++ ++SL +L++ +DV TA+L+G LE EIYM+ EGF++ + ++
Subjt: KWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSREL
Query: CSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKK-SQSGFAIIAVYVDDLNIIGTPEEL-SKAIEYLKKEFEMKDLGKTKFFLDLQI
KL + LYGLKQ+ R WY + + ++ + Y PCV+ K+ S++ F I+ +YVDD+ I+G + L +K L K F+MKDLG + L ++I
Subjt: CSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKK-SQSGFAIIAVYVDDLNIIGTPEEL-SKAIEYLKKEFEMKDLGKTKFFLDLQI
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.7e-29 | 33.5 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G +W+F +K N + + RYKARL A+G++QRPG+DY ET+SPV+ + +++ ++ + V ++ + +DV A+L G+L +++YM GF
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGT-PEELSKAIEYLKKEFEMKDLGKTKFFLDLQI
R KL++ LYGLKQ+ R WY L +YL G+ N +F+ + + VYVDD+ I G P L ++ L + F +KD + +FL ++
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGT-PEELSKAIEYLKKEFEMKDLGKTKFFLDLQI
Query: EHL
+ +
Subjt: EHL
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.2e-27 | 32.51 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G +W+F +K N + + RYKARL A+G++QRPG+DY ET+SPV+ + +++ ++ + V ++ + +DV A+L G+L +E+YM GF
Subjt: MGFKWVFVRKRNKNNEVTRYKARLAAQGFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSK-AIEYLKKEFEMKDLGKTKFFLDLQI
R +L++ +YGLKQ+ R WY L YL G+ N +F+ + + VYVDD+ I G L K ++ L + F +K+ +FL ++
Subjt: RELCSIKLQRLLYGLKQSGRMWYNRLNDYLWKEGYQNYPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSK-AIEYLKKEFEMKDLGKTKFFLDLQI
Query: EHL
+ +
Subjt: EHL
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