; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0161301 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0161301
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr06:9744648..9746553
RNA-Seq ExpressionCmc06g0161301
SyntenyCmc06g0161301
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR036397 - Ribonuclease H superfamily
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96309.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.5e-22468.48Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEALQNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTREILEK NMMNSK VATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

TYK06895.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-22368.32Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEA QNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTREILEK NMMNSK VATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

TYK11189.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-25293.46Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSL+                             RKTWVYFVKEKSEVFDMFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIK
        YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIK
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIK

Query:  AIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEE
        AIKKN+TWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEE
Subjt:  AIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEE

Query:  VYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEM
        VYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEM
Subjt:  VYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEM

Query:  TDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTNCPNMKNERMLILHISKVWLGV
        TDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTNCPNMKNERMLILHISKVWLGV
Subjt:  TDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTNCPNMKNERMLILHISKVWLGV

TYK13925.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.6e-22368.32Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEA QNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTR+ILEK NMMNSKSVATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-22368.32Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEA QNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTREILEK NMMNSK VATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

TrEMBL top hitse value%identityAlignment
A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-22368.32Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEA QNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTREILEK NMMNSK VATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-22368.32Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEA QNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTREILEK NMMNSK VATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

A0A5D3BBC7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-22468.48Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEALQNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTREILEK NMMNSK VATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

A0A5D3CLU6 Reverse transcriptase1.8e-25293.46Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSL+                             RKTWVYFVKEKSEVFDMFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIK
        YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIK
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIK

Query:  AIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEE
        AIKKN+TWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEE
Subjt:  AIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEE

Query:  VYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEM
        VYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEM
Subjt:  VYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEM

Query:  TDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTNCPNMKNERMLILHISKVWLGV
        TDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTNCPNMKNERMLILHISKVWLGV
Subjt:  TDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTNCPNMKNERMLILHISKVWLGV

A0A5D3CQU3 Retrovirus-related Pol polyprotein from transposon TNT 1-947.7e-22468.32Show/hide
Query:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG
        MVK LP+VK PDQLCEGCLH KQSRKSFP+ESS RARR LELVHTDLCGPIKPSSFGKNNYFL FIDDFSRKTWVYFVKEKSEVF MFKRFKALVEKESG
Subjt:  MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESG

Query:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------
        YYIKALRSDRGGEFTSNEFKTFC ENGI R MTVPFTPQQNGVVERKNRTILNMA+SMLKCKKMPKEFWAQAVECAV                       
Subjt:  YYIKALRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-----------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK
                                                          EPLNFEEA QNDKWKIAMDEEIKAIKKN+TWELSTLPNGKKAVGVKWVFK
Subjt:  --------------------------------------------------EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
        IKRNEKGEVERYKARLVAKGYSQRK IDYDEVFA VARLETIRLLIALA QNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKL+K LYG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPIEIRT
        YTR+ILEK NMMNSKSVATPIE  T
Subjt:  YTREILEKLNMMNSKSVATPIEIRT

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.2e-5824.97Show/hide
Query:  QLCEGCLHEKQSRKSFPR-ESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRG
        ++CE CL+ KQ+R  F + +  +  +R L +VH+D+CGPI P +    NYF+ F+D F+     Y +K KS+VF MF+ F A  E      +  L  D G
Subjt:  QLCEGCLHEKQSRKSFPR-ESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRG

Query:  GEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAV--------------------------------------
         E+ SNE + FC + GI   +TVP TPQ NGV ER  RTI   A++M+   K+ K FW +AV                                      
Subjt:  GEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAV--------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------EC--------------------------------------------------------------AVE
                                         EC                                                               +E
Subjt:  ---------------------------------EC--------------------------------------------------------------AVE

Query:  --------------------------------------PLNFEEALQND---KWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVE
                                              P +F+E    D    W+ A++ E+ A K NNTW ++  P  K  V  +WVF +K NE G   
Subjt:  --------------------------------------PLNFEEALQND---KWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVE

Query:  RYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNS
        RYKARLVA+G++Q+  IDY+E FA VAR+ + R +++L  Q N K+ QMDVK+AFLNG L+EE+Y+  P G S     D V KL K +YGLKQA R W  
Subjt:  RYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNS

Query:  RINKYFLDNGYLRCPYEHSLYIKVNGH-GDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKL
           +   +  ++    +  +YI   G+  + + V LYVDD++      +   + K  + ++F MTD+  + +++GI ++  E+ I++SQ  Y ++IL K 
Subjt:  RINKYFLDNGYLRCPYEHSLYIKVNGH-GDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKL

Query:  NMMNSKSVATPIEIRTN
        NM N  +V+TP+  + N
Subjt:  NMMNSKSVATPIEIRTN

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-8430.63Show/hide
Query:  CEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRGGEF
        C+ CL  KQ R SF + SS R    L+LV++D+CGP++  S G N YF++FIDD SRK WVY +K K +VF +F++F ALVE+E+G  +K LRSD GGE+
Subjt:  CEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRGGEF

Query:  TSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-------------------------------------
        TS EF+ +C+ +GI    TVP TPQ NGV ER NRTI+   +SML+  K+PK FW +AV+ A                                      
Subjt:  TSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAV-------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------EPLNFEEAL---QNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAV
                                                              EP + +E L   + ++   AM EE+++++KN T++L  LP GK+ +
Subjt:  ------------------------------------------------------EPLNFEEAL---QNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAV

Query:  GVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLK
          KWVFK+K++   ++ RYKARLV KG+ Q+K ID+DE+F+ V ++ +IR +++LA   + ++ Q+DVK+AFL+G LEEE+Y+EQP G+ V G++  V K
Subjt:  GVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLK

Query:  LEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEV--KQSE
        L K+LYGLKQAPR W  + + +     YL+   +  +Y K     + +++ LYVDD++  G    +   LK  +++ F+M D+G     LG+++  +++ 
Subjt:  LEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEV--KQSE

Query:  EGIFISQERYTREILEKLNMMNSKSVATPI
          +++SQE+Y   +LE+ NM N+K V+TP+
Subjt:  EGIFISQERYTREILEKLNMMNSKSVATPI

P25600 Putative transposon Ty5-1 protein YCL074W7.4e-2232.78Show/hide
Query:  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCAS
        MDV +AFLN  ++E +Y++QPPG+  +   D V +L   +YGLKQAP +WN  IN      G+ R   EH LY +    G I  + +YVDDL+       
Subjt:  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCAS

Query:  MFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEG-IFISQERYTREILEKLNMMNSKSVATPI-----EIRTNCPNMKN
        +++ +K  +T+ + M D+G +  +LG+ + QS  G I +S + Y  +   +  +   K   TP+        T  P++K+
Subjt:  MFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEG-IFISQERYTREILEKLNMMNSKSVATPI-----EIRTNCPNMKN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-5439.24Show/hide
Query:  KKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIKAIKKNNTWEL-STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVF
        K  PK   A ++    EP    +AL++++W+ AM  EI A   N+TW+L    P+    VG +W+F  K N  G + RYKARLVAKGY+QR  +DY E F
Subjt:  KKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIKAIKKNNTWEL-STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVF

Query:  ALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIK
        + V +  +IR+++ +A   +W I Q+DV +AFL G L ++VY+ QPPG+  K + + V KL K LYGLKQAPR W   +  Y L  G++    + SL++ 
Subjt:  ALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIK

Query:  VNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPI
          G   I+ + +YVDD++ TGN  ++  +  + ++Q F + D   + Y+LGIE K+   G+ +SQ RY  ++L + NM+ +K V TP+
Subjt:  VNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-1733.93Show/hide
Query:  CEGCLHEKQSRKSFPRESSSRARRSLELVHTDL-CGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRGGE
        C  CL  K ++  F  +S+  + R LE +++D+   PI   S     Y++ F+D F+R TW+Y +K+KS+V + F  FK L+E      I    SD GGE
Subjt:  CEGCLHEKQSRKSFPRESSSRARRSLELVHTDL-CGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRGGE

Query:  FTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLN
        F +     + +++GI    + P TP+ NG+ ERK+R I+    ++L    +PK +W  A   AV  +N
Subjt:  FTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.0e-5637.38Show/hide
Query:  PMTVPFTP--QQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIKAIKKNNTWEL-STLPNGKKAVGVKWVFK
        P  +P  P  Q N        ++   A+  ++ K   K  +A ++    EP    +A+++D+W+ AM  EI A   N+TW+L    P     VG +W+F 
Subjt:  PMTVPFTP--QQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIKAIKKNNTWEL-STLPNGKKAVGVKWVFK

Query:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG
         K N  G + RYKARLVAKGY+QR  +DY E F+ V +  +IR+++ +A   +W I Q+DV +AFL G L +EVY+ QPPG+  K + D V +L K +YG
Subjt:  IKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLEKTLYG

Query:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER
        LKQAPR W   +  Y L  G++    + SL++   G   I+ + +YVDD++ TGN   + +   +A++Q F + +   + Y+LGIE K+  +G+ +SQ R
Subjt:  LKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER

Query:  YTREILEKLNMMNSKSVATPI
        YT ++L + NM+ +K VATP+
Subjt:  YTREILEKLNMMNSKSVATPI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.7e-1935.12Show/hide
Query:  CEGCLHEKQSRKSFPRESSSRARRSLELVHTDL-CGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRGGE
        C  C   K  +  F   S+  + + LE +++D+   PI   S     Y++ F+D F+R TW+Y +K+KS+V D F  FK+LVE      I  L SD GGE
Subjt:  CEGCLHEKQSRKSFPRESSSRARRSLELVHTDL-CGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKALRSDRGGE

Query:  FTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLN
        F     + + +++GI    + P TP+ NG+ ERK+R I+ M  ++L    +PK +W  A   AV  +N
Subjt:  FTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLN

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.7e-5638.13Show/hide
Query:  AVEPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIAL
        A EP  + EA +   W  AMD+EI A++  +TWE+ TLP  KK +G KWV+KIK N  G +ERYKARLVAKGY+Q++ ID+ E F+ V +L +++L++A+
Subjt:  AVEPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIAL

Query:  ATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQE----DKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVC
        +   N+ + Q+D+ +AFLNG L+EE+Y++ PPGY+ +  +    + V  L+K++YGLKQA R W  + +   +  G+++   +H+ ++K+      L V 
Subjt:  ATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQE----DKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVC

Query:  LYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIE
        +YVDD+I   N  +  ++LK+ +   F++ D+G + Y+LG+E+ +S  GI I Q +Y  ++L++  ++  K  + P++
Subjt:  LYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIE

ATMG00810.1 DNA/RNA polymerases superfamily protein2.1e-1133.72Show/hide
Query:  LVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTN
        + + LYVDD++ TG+  ++   L   ++  F M D+G + Y+LGI++K    G+F+SQ +Y  +IL    M++ K ++TP+ ++ N
Subjt:  LVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKLNMMNSKSVATPIEIRTN

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)2.0e-1441.58Show/hide
Query:  EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALAT
        EP +   AL++  W  AM EE+ A+ +N TW L   P  +  +G KWVFK K +  G ++R KARLVAKG+ Q + I + E ++ V R  TIR ++ +A 
Subjt:  EPLNFEEALQNDKWKIAMDEEIKAIKKNNTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALAT

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAGAGTTGCCACATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGAAAAACAATCAAGGAAGAGTTTTCCACGAGAATCATCTTCGAGA
GCAAGGAGATCACTGGAGTTAGTTCACACGGATCTTTGTGGACCGATCAAACCAAGTTCTTTTGGTAAGAATAATTATTTCTTATCATTTATTGATGATTTCAGC
CGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGACATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCT
TTGAGATCAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCTGTCGACCTATGACAGTTCCATTTACTCCTCAACAA
AATGGTGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCAAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTGGGCACAAGCTGTTGAGTGT
GCAGTTGAACCTTTGAATTTTGAAGAAGCTTTGCAAAATGACAAATGGAAGATTGCTATGGATGAAGAGATAAAAGCCATAAAAAAGAATAATACGTGGGAACTT
TCTACTCTTCCAAATGGAAAGAAAGCAGTAGGTGTCAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGAGAAGTGGAGAGATACAAAGCAAGATTAGTTGCA
AAAGGATATTCTCAAAGAAAAGACATTGATTATGATGAAGTATTTGCTCTCGTTGCTCGTTTGGAAACTATAAGGTTGTTAATTGCTCTTGCTACACAAAATAAT
TGGAAGATCTTTCAGATGGATGTCAAATCGGCATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTGGAACAACCTCCTGGTTATTCTGTGAAAGGCCAAGAG
GATAAAGTTCTAAAATTGGAGAAGACATTATACGGATTGAAACAGGCACCAAGAATGTGGAATAGCAGAATCAACAAATATTTCCTTGATAATGGGTATTTGAGG
TGTCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTAGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTGCAAGT
ATGTTTGAAGATCTCAAGAACGCGATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATACTATCTTGGCATTGAAGTGAAGCAGTCAGAGGAAGGA
ATTTTCATCTCTCAAGAACGATATACTAGAGAAATTCTAGAGAAGTTGAATATGATGAATTCTAAGTCTGTTGCAACTCCGATTGAAATTAGGACAAATTGTCCA
AACATGAAGAATGAGAGGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAAGAGTTGCCACATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGAAAAACAATCAAGGAAGAGTTTTCCACGAGAATCATCTTCGAGA
GCAAGGAGATCACTGGAGTTAGTTCACACGGATCTTTGTGGACCGATCAAACCAAGTTCTTTTGGTAAGAATAATTATTTCTTATCATTTATTGATGATTTCAGC
CGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGACATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCT
TTGAGATCAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCGCAGAAAATGGAATCTGTCGACCTATGACAGTTCCATTTACTCCTCAACAA
AATGGTGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCAAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTGGGCACAAGCTGTTGAGTGT
GCAGTTGAACCTTTGAATTTTGAAGAAGCTTTGCAAAATGACAAATGGAAGATTGCTATGGATGAAGAGATAAAAGCCATAAAAAAGAATAATACGTGGGAACTT
TCTACTCTTCCAAATGGAAAGAAAGCAGTAGGTGTCAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGAGAAGTGGAGAGATACAAAGCAAGATTAGTTGCA
AAAGGATATTCTCAAAGAAAAGACATTGATTATGATGAAGTATTTGCTCTCGTTGCTCGTTTGGAAACTATAAGGTTGTTAATTGCTCTTGCTACACAAAATAAT
TGGAAGATCTTTCAGATGGATGTCAAATCGGCATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTGGAACAACCTCCTGGTTATTCTGTGAAAGGCCAAGAG
GATAAAGTTCTAAAATTGGAGAAGACATTATACGGATTGAAACAGGCACCAAGAATGTGGAATAGCAGAATCAACAAATATTTCCTTGATAATGGGTATTTGAGG
TGTCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTAGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTGCAAGT
ATGTTTGAAGATCTCAAGAACGCGATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATACTATCTTGGCATTGAAGTGAAGCAGTCAGAGGAAGGA
ATTTTCATCTCTCAAGAACGATATACTAGAGAAATTCTAGAGAAGTTGAATATGATGAATTCTAAGTCTGTTGCAACTCCGATTGAAATTAGGACAAATTGTCCA
AACATGAAGAATGAGAGGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGA
Protein sequenceShow/hide protein sequence
MVKELPHVKHPDQLCEGCLHEKQSRKSFPRESSSRARRSLELVHTDLCGPIKPSSFGKNNYFLSFIDDFSRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIKA
LRSDRGGEFTSNEFKTFCAENGICRPMTVPFTPQQNGVVERKNRTILNMAQSMLKCKKMPKEFWAQAVECAVEPLNFEEALQNDKWKIAMDEEIKAIKKNNTWEL
STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKDIDYDEVFALVARLETIRLLIALATQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQE
DKVLKLEKTLYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNAMTQEFEMTDIGLMSYYLGIEVKQSEEG
IFISQERYTREILEKLNMMNSKSVATPIEIRTNCPNMKNERMLILHISKVWLGV