; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0161741 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0161741
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:10399372..10400901
RNA-Seq ExpressionCmc06g0161741
SyntenyCmc06g0161741
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037244.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-27994.89Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTREVDVSLS EPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK E EHEEHL MVLQTLRDNKLYAKF KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

KAA0040188.1 pol protein [Cucumis melo var. makuwa]7.6e-28094.7Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTREVDVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVF+EFLDTFVIVFIDDILIYSKMEAEHEEHL +VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLG VLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAV+FALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITR APLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG +TM
Subjt:  AVSVGTVTM

KAA0048687.1 pol protein [Cucumis melo var. makuwa]1.2e-28095.28Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTRE DVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK EAEHEEHL MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

KAA0062719.1 pol protein [Cucumis melo var. makuwa]4.9e-27994.89Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTR+ DVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK EAEHEEHL MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVL+QQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

TYK01613.1 pol protein [Cucumis melo var. makuwa]5.8e-28095.09Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTRE DVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK EAEHEEHL MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQ LKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

TrEMBL top hitse value%identityAlignment
A0A5A7T190 Reverse transcriptase1.4e-27994.89Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTREVDVSLS EPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK E EHEEHL MVLQTLRDNKLYAKF KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

A0A5A7TB42 Reverse transcriptase3.7e-28094.7Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTREVDVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVF+EFLDTFVIVFIDDILIYSKMEAEHEEHL +VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLG VLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAV+FALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITR APLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG +TM
Subjt:  AVSVGTVTM

A0A5A7U330 Reverse transcriptase5.7e-28195.28Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTRE DVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK EAEHEEHL MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

A0A5A7VAL8 Pol protein2.4e-27994.89Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTR+ DVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK EAEHEEHL MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQNLKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVL+QQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

A0A5D3BPI1 Reverse transcriptase2.8e-28095.09Show/hide
Query:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS
        +R +KLLSQGTW ILASVVDTRE DVSLSSEPV RDYPDVFPEELPGLPPHRE+EFAIELE GTVPISRAPYRMAPAELK+LKVQLQELLDKGFIRPSVS
Subjt:  MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSK EAEHEEHL MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPST+SEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFL

Query:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT
        GLA YYRRFV+NFS IATPLTQLTRKGAPFVWSKACED+FQ LKQ+LVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNY T
Subjt:  GLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA SRKVSHSAALITRQAPLH+DLERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEI

Query:  AVSVGTVTM
        AVSVG VTM
Subjt:  AVSVGTVTM

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.67.1e-8739.66Show/hide
Query:  YRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI
        Y    A  ++++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +
Subjt:  YRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI

Query:  KDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLG
            V KTAF +++GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+++S    EH + L +V + L    L  +  KCEF  ++ +FLG
Subjt:  KDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLG

Query:  HVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDN-FQNLKQRLVTAPVLTVPDGSGSFVIY
        HV++  G+  +P KIEA+  +P P+   E+++FLGL  YYR+F+ NF+ IA P+T+  +K      +    D+ F+ LK  +   P+L VPD +  F + 
Subjt:  HVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDN-FQNLKQRLVTAPVLTVPDGSGSFVIY

Query:  SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG
        +DAS   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +I +DH+ L + +  K+ N +  RW   + ++D +I Y  G
Subjt:  SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG

Query:  KANVVADAHSR
        K N VADA SR
Subjt:  KANVVADAHSR

P0CT34 Transposon Tf2-1 polyprotein2.6e-8136.83Show/hide
Query:  EELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDL
        E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L
Subjt:  EELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDL

Query:  FDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQT
          ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK E+EH +H+  VLQ 
Subjt:  FDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQT

Query:  LRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQN
        L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG  +Y R+F+   S +  PL  L +K   + W+       +N
Subjt:  LRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQN

Query:  LKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKY
        +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L  
Subjt:  LKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKY

Query:  FFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHS
          T +    N R  RW   ++D++ EI Y PG AN +ADA SR V  +
Subjt:  FFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHS

P0CT41 Transposon Tf2-12 polyprotein2.6e-8136.83Show/hide
Query:  EELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDL
        E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L
Subjt:  EELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDL

Query:  FDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQT
          ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK E+EH +H+  VLQ 
Subjt:  FDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQT

Query:  LRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQN
        L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG  +Y R+F+   S +  PL  L +K   + W+       +N
Subjt:  LRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSKACEDNFQN

Query:  LKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKY
        +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L  
Subjt:  LKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKY

Query:  FFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHS
          T +    N R  RW   ++D++ EI Y PG AN +ADA SR V  +
Subjt:  FFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHS

P20825 Retrovirus-related Pol polyprotein from transposon 2971.6e-8638.85Show/hide
Query:  PISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG
        PI    Y +A     +++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G
Subjt:  PISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG

Query:  YHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLK
        +HQ+ + +  + KTAF ++ GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+I+S    EH   + +V   L D  L  +  KCEF  K
Subjt:  YHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLK

Query:  QVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSK-ACEDNFQNLKQRLVTAPVLTVPDGS
        + +FLGH+V+  G+  +P K++A+ S+P P+   E+R+FLGL  YYR+F+ N++ IA P+T   +K       K    + F+ LK  ++  P+L +PD  
Subjt:  QVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVWSK-ACEDNFQNLKQRLVTAPVLTVPDGS

Query:  GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCE
          FV+ +DAS   LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL G +  I +DH+ L++    KE   +  RW   + +Y  +
Subjt:  GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCE

Query:  ILYHPGKANVVADAHSR
        I Y  GK N VADA SR
Subjt:  ILYHPGKANVVADAHSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.8e-8335.27Show/hide
Query:  DYPDVFPEELPGLPPHREIEFAIELEAGT---VPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNK
        ++P +F   L G+     +E A++ E  T    PI    Y        +++ Q+ ELL  G IRPS SP+ +P+  V KK     +   R+ +D++ LN 
Subjt:  DYPDVFPEELPGLPPHREIEFAIELEAGT---VPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNK

Query:  VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSK
        VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +K+ D+PKTAF +  G YEF+ + FGL NAPA+F  +++ + RE +     V+IDDI+++S+
Subjt:  VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSK

Query:  MEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTR--
            H ++L +VL +L    L     K  F   QV FLG++V+  G+  DP K+ A++  P P+++ E++ FLG+ SYYR+F+++++ +A PLT LTR  
Subjt:  MEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTR--

Query:  ---------KGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYLTHDLELAAVVFAL
                    P    +    +F +LK  L ++ +L  P  +  F + +DAS   +G VL Q    + + +AY SR L   E+NY T + E+ A++++L
Subjt:  ---------KGAPFVWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYLTHDLELAAVVFAL

Query:  KIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSR
           R YLYG   I+++TDH+ L +    +  N + +RW   +++Y+CE++Y PGK+NVVADA SR
Subjt:  KIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.8e-2745.8Show/hide
Query:  HLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVW
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P   +E+R FLGL  YYRRFVKN+  I  PLT+L +K +   W
Subjt:  HLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPFVW

Query:  SKACEDNFQNLKQRLVTAPVLTVPDGSGSFV
        ++     F+ LK  + T PVL +PD    FV
Subjt:  SKACEDNFQNLKQRLVTAPVLTVPDGSGSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGTTAACAAACTGCTCAGTCAGGGTACTTGGAGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTTGATGTATCCCTGTCCTCAGAACCAGTGGCAAGGGACTA
TCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGTTGGAGGCGGGCACGGTTCCTATATCCAGAGCCCCGTACAGAA
TGGCCCCAGCAGAGTTGAAAAAACTGAAAGTGCAGTTACAGGAATTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAG
AAGAAGGATGGATCAATGCGCCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACA
GGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGGCCTTTCGTTCCAGATACGGACACTATG
AGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGAT
GACATTTTGATATATTCCAAGATGGAGGCCGAGCATGAGGAACATTTAAGTATGGTTCTGCAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTT
TTGGCTGAAGCAAGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTTACCAGTTGGCCCCGACCTTCCACAATCA
GTGAGGTTCGTAGCTTTCTGGGTTTAGCAAGTTATTATCGACGGTTTGTGAAGAACTTTTCCCATATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTT
GTTTGGAGCAAGGCATGTGAGGACAATTTCCAGAACCTTAAACAGAGGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTACAGTGA
TGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCTTACACATGATTTAG
AGTTGGCAGCAGTGGTTTTTGCATTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATATTTCTTTACTCAGAAG
GAATTGAATATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCATAGTAGAAA
GGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCGTTACATCAAGATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAGGGACAGTCACTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGTTAACAAACTGCTCAGTCAGGGTACTTGGAGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTTGATGTATCCCTGTCCTCAGAACCAGTGGCAAGGGACTA
TCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGTTGGAGGCGGGCACGGTTCCTATATCCAGAGCCCCGTACAGAA
TGGCCCCAGCAGAGTTGAAAAAACTGAAAGTGCAGTTACAGGAATTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAG
AAGAAGGATGGATCAATGCGCCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACA
GGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGGCCTTTCGTTCCAGATACGGACACTATG
AGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGAT
GACATTTTGATATATTCCAAGATGGAGGCCGAGCATGAGGAACATTTAAGTATGGTTCTGCAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTT
TTGGCTGAAGCAAGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTTACCAGTTGGCCCCGACCTTCCACAATCA
GTGAGGTTCGTAGCTTTCTGGGTTTAGCAAGTTATTATCGACGGTTTGTGAAGAACTTTTCCCATATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTT
GTTTGGAGCAAGGCATGTGAGGACAATTTCCAGAACCTTAAACAGAGGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTACAGTGA
TGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCTTACACATGATTTAG
AGTTGGCAGCAGTGGTTTTTGCATTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATATTTCTTTACTCAGAAG
GAATTGAATATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCATAGTAGAAA
GGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCGTTACATCAAGATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAGGGACAGTCACTATGTAG
Protein sequenceShow/hide protein sequence
MRVNKLLSQGTWSILASVVDTREVDVSLSSEPVARDYPDVFPEELPGLPPHREIEFAIELEAGTVPISRAPYRMAPAELKKLKVQLQELLDKGFIRPSVSPWGAPVLFVK
KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFID
DILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYYRRFVKNFSHIATPLTQLTRKGAPF
VWSKACEDNFQNLKQRLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYLTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQK
ELNMRQRRWLELVKDYDCEILYHPGKANVVADAHSRKVSHSAALITRQAPLHQDLERAEIAVSVGTVTM