CuGenDBv2

Gene ID	Cmc06g0162001
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RNA-directed DNA polymerase
Genome location	CMiso1.1chr06:10616520..10617074
RNA-Seq Expression	Cmc06g0162001
Synteny	Cmc06g0162001
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004386 - helicase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

PKU65298.1 hypothetical protein MA16_Dca018606 [Dendrobium catenatum]

4.7e-62

66.28

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        +DF+LGLP+T+RG DSI VVVDRF KMAHF+PCKKTF+A  +AKLFF EI+ LHGIP+S+TSDRDVKF+SHFWR LWRR NT+++ SS+YHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTM
        VNRT+GN+LR LV +NPK WD  L QAEF++N+ PN+S   SPF IVYTK+PN+ VD+    K   + A+T+
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTM

PKU66549.1 RNA-directed DNA polymerase [Dendrobium catenatum]

1.8e-61

72.15

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        +DF+LGLPRT+ GVDSI VVVDRF KM+HF+PCKKTF+A  VAKLFF EIV LHG+P+SITSDRDVKF+SHFWR LW+R +T IK SSAYHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDL
        VNRT+GNMLR LV + PKKW+  L  AEFSYN+M N+S    PF IVYTK+PN+  DL
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDL

PKU67703.1 RNA-directed DNA polymerase [Dendrobium catenatum]

6.1e-62

68.86

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        +DF+LGLPRT+ G DSI VVVDRF KMAHF+PCKKTF+A  +A+LFF EI+ LHG+P+SITSDRDVKFVSHFWR LW+R  T +K SSAYHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCR
        VNRT+GNMLR LV ++PKKW+  L QAEF++N+MPN+S   SPF IVYTK+PN  VD++   K  CR
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCR

PKU67721.1 putative mitochondrial protein [Dendrobium catenatum]

9.4e-63

69.23

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDF+LGLPRT++GVDSI VVVDRF KMAHF+ CKKT +A +VA+LFF E+V LHG+P+SITSDRDVKF+SHFWR LWR+  T +K SSAYHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKA
        VNRT+GNMLR LV +NPK+WD  L QAEF+YN+MPN+S  + PF IVYTK PN  VD+    K  CR A
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKA

PKU86669.1 RNA-directed DNA polymerase [Dendrobium catenatum]

8.5e-64

72.78

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        +DF+LGLPRT+RG DSI VVVDRF KM HF+PCKKTF+A  +A LFF EIV LHG+P+S+TSDRDVKFVSHFWR LWRR +T +KFSSAYHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDL
        VNRT+GNMLR LV +NPK+W+  L QAEF+YN++PN+S K SPFQ+VYTK PN  VD+
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDL

TrEMBL top hits

e value

%identity

Alignment

A0A2I0VPG2 Integrase catalytic domain-containing protein

2.3e-62

66.28

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        +DF+LGLP+T+RG DSI VVVDRF KMAHF+PCKKTF+A  +AKLFF EI+ LHGIP+S+TSDRDVKF+SHFWR LWRR NT+++ SS+YHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTM
        VNRT+GN+LR LV +NPK WD  L QAEF++N+ PN+S   SPF IVYTK+PN+ VD+    K   + A+T+
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTM

A0A2I0VWB5 RNA-directed DNA polymerase

2.9e-62

68.86

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        +DF+LGLPRT+ G DSI VVVDRF KMAHF+PCKKTF+A  +A+LFF EI+ LHG+P+SITSDRDVKFVSHFWR LW+R  T +K SSAYHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCR
        VNRT+GNMLR LV ++PKKW+  L QAEF++N+MPN+S   SPF IVYTK+PN  VD++   K  CR
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCR

A0A2I0VWD1 Putative mitochondrial protein

4.5e-63

69.23

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDF+LGLPRT++GVDSI VVVDRF KMAHF+ CKKT +A +VA+LFF E+V LHG+P+SITSDRDVKF+SHFWR LWR+  T +K SSAYHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKA
        VNRT+GNMLR LV +NPK+WD  L QAEF+YN+MPN+S  + PF IVYTK PN  VD+    K  CR A
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKA

A0A2I0XFK1 RNA-directed DNA polymerase

4.1e-64

72.78

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        +DF+LGLPRT+RG DSI VVVDRF KM HF+PCKKTF+A  +A LFF EIV LHG+P+S+TSDRDVKFVSHFWR LWRR +T +KFSSAYHPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDL
        VNRT+GNMLR LV +NPK+W+  L QAEF+YN++PN+S K SPFQ+VYTK PN  VD+
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDL

A0A5B7BER3 Uncharacterized protein

5.9e-63

69.94

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDFILGLPRTQRG+DS+FVVVDRF KMAHF+PCKKT +AS VA LFF EIV LHG+PKSITSDRDVKF+SHFWR LWR+F+TS+++SS  HPQTDGQTEV
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQK
         NRT+GN++R   G+ PK+WD+ LPQ EF+YN M N+S K +PF+IVYTK P   +DL P  K
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

6.0e-28

39.75

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDFI  LP +  G +++FVVVDRF KMA  +PC K+  A   A++F   ++   G PK I +D D  F S  W+    ++N  +KFS  Y PQTDGQTE 
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPS
         N+TV  +LR +   +P  W   +   + SYNN  + + +++PF+IV+   P  +   LPS
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPS

P0CT41 Transposon Tf2-12 polyprotein

6.0e-28

39.75

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDFI  LP +  G +++FVVVDRF KMA  +PC K+  A   A++F   ++   G PK I +D D  F S  W+    ++N  +KFS  Y PQTDGQTE 
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPS
         N+TV  +LR +   +P  W   +   + SYNN  + + +++PF+IV+   P  +   LPS
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPS

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

4.0e-32

41.14

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDF+ GLP T   ++ I VVVDRF K AHF+  +KT +A+ +  L F  I   HG P++ITSDRDV+  +  ++ L +R       SSA HPQTDGQ+E 
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTMSEL
          +T+  +LR+ V  N + W ++LPQ EF YN+ P ++   SPF+I    +PN+    + S  E+  ++ T  EL
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTMSEL

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.2e-31

40.57

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDF+ GLP T   ++ I VVVDRF K AHF+  +KT +A+ +  L F  I   HG P++ITSDRDV+  +  ++ L +R       SSA HPQTDGQ+E 
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTMSEL
          +T+  +LR+    N + W ++LPQ EF YN+ P ++   SPF+I    +PN+    + S  E+  ++ T  EL
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTMSEL

Q9UR07 Transposon Tf2-11 polyprotein

6.0e-28

39.75

Show/hide

Query:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV
        MDFI  LP +  G +++FVVVDRF KMA  +PC K+  A   A++F   ++   G PK I +D D  F S  W+    ++N  +KFS  Y PQTDGQTE 
Subjt:  MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEV

Query:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPS
         N+TV  +LR +   +P  W   +   + SYNN  + + +++PF+IV+   P  +   LPS
Subjt:  VNRTVGNMLRSLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTTATCCTTGGATTACCAAGAACACAAAGGGGAGTTGACTCTATTTTTGTGGTTGTTGATCGATTCTTTAAAATGGCACACTTTTTGCCATGCAAGAAAACATT
CAATGCTAGTGCTGTGGCAAAATTGTTTTTTCATGAGATTGTGTGGTTACATGGCATTCCAAAATCTATCACTTCAGATCGAGATGTGAAATTTGTTAGTCATTTTTGGA
GGATCTTATGGAGACGTTTTAACACATCTATAAAGTTTAGTAGTGCTTACCACCCGCAAACTGATGGACAGACAGAGGTTGTCAATAGAACTGTGGGAAATATGCTTCGT
AGTTTGGTTGGAGAAAATCCTAAAAAGTGGGATTTATTTTTGCCACAAGCAGAATTTTCCTACAATAACATGCCTAATAAATCTAATAAATTAAGTCCGTTTCAAATAGT
TTACACCAAAGTGCCTAACAGCACAGTTGATTTACTTCCTAGTCAAAAGGAAATGTGCAGAAAAGCTAACACAATGTCTGAACTGAAGATATCATCAATATCAGCGATAG
AGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDFILGLPRTQRGVDSIFVVVDRFFKMAHFLPCKKTFNASAVAKLFFHEIVWLHGIPKSITSDRDVKFVSHFWRILWRRFNTSIKFSSAYHPQTDGQTEVVNRTVGNMLR
SLVGENPKKWDLFLPQAEFSYNNMPNKSNKLSPFQIVYTKVPNSTVDLLPSQKEMCRKANTMSELKISSISAIE

Cmc06g0162001 (gene) of Melon (Charmono) v1.1 genome