| GenBank top hits | e value | %identity | Alignment |
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| KAA0037169.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 6.7e-107 | 98.48 | Show/hide |
Query: MLNKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITI
MLNKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGK SSMKDLVEAAYILGITI
Subjt: MLNKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITI
Query: YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPM YGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSN GEAH
Subjt: YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| KAD2392955.1 hypothetical protein E3N88_39932 [Mikania micrantha] | 2.7e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGFIKNEDEPCVY K +G+ ++FL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL EAAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM+++ Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| KAD5802963.1 hypothetical protein E3N88_14323 [Mikania micrantha] | 2.1e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGFIKNEDEPCVY K +G+ ++FL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL EAAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM+++ Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| KAD6119034.1 hypothetical protein E3N88_10305 [Mikania micrantha] | 2.1e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGF+KNEDEPCVY K +G+ ++FL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL EAAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM++I Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| KAD6796592.1 hypothetical protein E3N88_07488 [Mikania micrantha] | 2.1e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGFIKNEDEPCVY K +G+ +IFL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL +AAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM+++ Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5D3CS81 Putative gag-pol polyprotein | 3.2e-107 | 98.48 | Show/hide |
Query: MLNKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITI
MLNKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGK SSMKDLVEAAYILGITI
Subjt: MLNKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITI
Query: YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPM YGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSN GEAH
Subjt: YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| A0A5N6LL65 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.3e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGFIKNEDEPCVY K +G+ ++FL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL EAAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM+++ Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| A0A5N6P340 Uncharacterized protein | 1.0e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGFIKNEDEPCVY K +G+ ++FL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL EAAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM+++ Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| A0A5N6PC81 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.0e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGF+KNEDEPCVY K +G+ ++FL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL EAAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM++I Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| A0A5N6PSR3 Uncharacterized protein | 1.0e-76 | 69.9 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
NKVCK +KSIYGLKQASRSWNL FD+ +KEFGFIKNEDEPCVY K +G+ +IFL+LYVDDILLIGNDIPTL +KSWLGKC +MKDL +AAYILGI IYR
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
DR RRL+ LSQS YIDK+++RF+MQD+KRGFLPMA+G L K QCP+ +D ++RM+++ Y S + SIMY MLCT+PDVS L + SRYQ N G+AH
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.1e-24 | 34 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVY--KKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITI
+ VCK K+IYGLKQA+R W F++ +KE F+ + + C+Y K N N I+++LYVDD+++ D+ + N K +L + M DL E + +GI I
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVY--KKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITI
Query: YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISL--------CKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQS
+ + LSQSAY+ KIL +FNM++ P+ I+ C C S + +MY+MLCT+PD++ + + SRY S
Subjt: YRDRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISL--------CKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQS
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.1e-40 | 42.56 | Show/hide |
Query: VCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVY-KKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYRD
VCK KS+YGLKQA R W + FD +K ++K +PCVY K+ + N I L+LYVDD+L++G D + +K L K MKDL A ILG+ I R+
Subjt: VCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVY-KKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYRD
Query: RCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
R R L LSQ YI+++L+RFNM+++K P+A + L K CP +++ M K+ Y S + S+MY M+CT+PD++ + + SR+ N G+ H
Subjt: RCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| P25600 Putative transposon Ty5-1 protein YCL074W | 1.5e-13 | 28.49 | Show/hide |
Query: IYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYRDRCRRLLAL
+YGLKQA WN H + T+K+ GF ++E E +Y + + I++ +YVDD+L+ +K L K SMKDL + LG+ I++ + L
Subjt: IYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYRDRCRRLLAL
Query: SQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRY
S YI K + K P+ L + P ++D Y S + +++ +PD+S + L SR+
Subjt: SQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRY
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.5e-19 | 33.16 | Show/hide |
Query: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
N VCK +K++YGLKQA R+W + + GF+ + + ++ G I+++++YVDDIL+ GND L N L + S+KD E Y LGI
Subjt: NKVCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYR
Query: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
R L LSQ YI +L R NM +K PMA L K+ D +Y + S+ Y+ T+PD+S + S++ E H
Subjt: DRCRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRYQSNLGEAH
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.1e-17 | 32.26 | Show/hide |
Query: VCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYRDR
VC+ +K+IYGLKQA R+W + + GF+ + + ++ G II++++YVDDIL+ GND L++ L + S+K+ + Y LGI R
Subjt: VCKSQKSIYGLKQASRSWNLHFDKTVKEFGFIKNEDEPCVYKKVNGNPIIFLVLYVDDILLIGNDIPTLQNIKSWLGKCSSMKDLVEAAYILGITIYRDR
Query: CRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRY
+ L LSQ Y +L R NM +K PMA L + K+ D +Y + S+ Y+ T+PD+S + S+Y
Subjt: CRRLLALSQSAYIDKILKRFNMQDSKRGFLPMAYGISLCKNQCPKVQDDRKRMQKIQYVSTMDSIMYVMLCTQPDVSCTLRLASRY
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