; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0162911 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0162911
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr06:12050820..12051320
RNA-Seq ExpressionCmc06g0162911
SyntenyCmc06g0162911
Gene Ontology termsNA
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037203.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-8394.58Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        ++ P +    AVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC
        LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC

KAA0045362.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.3e-6889.86Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        MHKP VIHFSAVKRILRYL GTPTLGIKFRKGSFSLQTFCDSDW +DTSDR STSGFIAFLGSNPISWSSKKQS +SRSS EAEY SLATTT DLYWI+Q
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
        LLCDLHV LKTSPTLWCDNVSAISLAHNPVFHA TKHIEI+YHFV EK
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

XP_016901044.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]9.1e-6586.49Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        MHKP VIHFS VKRILRYL GTP  GIKFRK  FSLQTFCD DW  DTSDR STS FIAFLGSNPISWSSKKQST+SRSS EAEY SLATTTVDLYWI+Q
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
        LLCDLHV LKTSPTLWCDNVSAISLAHNPVFHA TKHIEI+YHFVR+K
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

XP_016901898.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]9.6e-8393.98Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        ++ P +    AVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC
        LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFV EKSSLQRHLRPLHLFQQPTC
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC

XP_016902250.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.5e-6787.16Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        +HKP VIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDS+W  DT DRCSTSGFIAFLGSNPISWSSKKQST+SRSS EAEYRSLATTTVDLYWI+Q
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
        L+CDLHV LKTSPTLW DNVSAISLAHNP+FHA  KHI+I+YHFV +K
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

TrEMBL top hitse value%identityAlignment
A0A1S4DYI8 uncharacterized mitochondrial protein AtMg00810-like4.4e-6586.49Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        MHKP VIHFS VKRILRYL GTP  GIKFRK  FSLQTFCD DW  DTSDR STS FIAFLGSNPISWSSKKQST+SRSS EAEY SLATTTVDLYWI+Q
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
        LLCDLHV LKTSPTLWCDNVSAISLAHNPVFHA TKHIEI+YHFVR+K
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

A0A1S4E100 uncharacterized mitochondrial protein AtMg00810-like4.7e-8393.98Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        ++ P +    AVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC
        LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFV EKSSLQRHLRPLHLFQQPTC
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC

A0A1S4E2P5 uncharacterized mitochondrial protein AtMg00810-like7.2e-6887.16Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        +HKP VIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDS+W  DT DRCSTSGFIAFLGSNPISWSSKKQST+SRSS EAEYRSLATTTVDLYWI+Q
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
        L+CDLHV LKTSPTLW DNVSAISLAHNP+FHA  KHI+I+YHFV +K
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

A0A5A7T2K7 Putative mitochondrial protein5.5e-8494.58Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        ++ P +    AVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC
        LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC

A0A5A7TPR4 Putative mitochondrial protein1.1e-6889.86Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ
        MHKP VIHFSAVKRILRYL GTPTLGIKFRKGSFSLQTFCDSDW +DTSDR STSGFIAFLGSNPISWSSKKQS +SRSS EAEY SLATTT DLYWI+Q
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQ

Query:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
        LLCDLHV LKTSPTLWCDNVSAISLAHNPVFHA TKHIEI+YHFV EK
Subjt:  LLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

SwissProt top hitse value%identityAlignment
P04146 Copia protein7.1e-2036.88Show/hide
Query:  VKRILRYLRGTPTLGIKFRKG---SFSLQTFCDSDWTSDTSDRCSTSGFI-AFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQLLCDLHV
        +KR+LRYL+GT  + + F+K       +  + DSDW     DR ST+G++      N I W++K+Q++++ SS EAEY +L     +  W++ LL  +++
Subjt:  VKRILRYLRGTPTLGIKFRKG---SFSLQTFCDSDWTSDTSDRCSTSGFI-AFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQLLCDLHV

Query:  SLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
         L+    ++ DN   IS+A+NP  H   KHI+I YHF RE+
Subjt:  SLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-2037.86Show/hide
Query:  HFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQLLCDLHV
        H+ AVK ILRYLRGT    + F      L+ + D+D   D  +R S++G++       ISW SK Q  ++ S+ EAEY +   T  ++ W+++ L +L +
Subjt:  HFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQLLCDLHV

Query:  SLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVRE
          K    ++CD+ SAI L+ N ++HA TKHI++ YH++RE
Subjt:  SLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVRE

P92519 Uncharacterized mitochondrial protein AtMg008101.7e-2153.06Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGS-FSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYW
        MH+P +  F  +KR+LRY++GT   G+   K S  ++Q FCDSDW   TS R ST+GF  FLG N ISWS+K+Q T+SRSS E EYR+LA T  +L W
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGS-FSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE19.8e-3852.35Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKG-SFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQ
        MH P   H  A+KRILRYL GTP  GI  +KG + SL  + D+DW  D  D  ST+G+I +LG +PISWSSKKQ  + RSS EAEYRS+A T+ ++ WI 
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKG-SFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQ

Query:  QLLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
         LL +L + L   P ++CDNV A  L  NPVFH+  KHI I+YHF+R +
Subjt:  QLLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.0e-3852.35Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKG-SFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQ
        MH P   H++A+KR+LRYL GTP  GI  +KG + SL  + D+DW  DT D  ST+G+I +LG +PISWSSKKQ  + RSS EAEYRS+A T+ +L WI 
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKG-SFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQ

Query:  QLLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK
         LL +L + L   P ++CDNV A  L  NPVFH+  KHI ++YHF+R +
Subjt:  QLLCDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.2e-2743.14Show/hide
Query:  PIVIHFSAVKRILRYLRGTPTLGIKF-RKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQLL
        P + H  AV +IL Y++GT   G+ +  +    LQ F D+ + S    R ST+G+  FLG++ ISW SKKQ  +S+SS EAEYR+L+  T ++ W+ Q  
Subjt:  PIVIHFSAVKRILRYLRGTPTLGIKF-RKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQLL

Query:  CDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHL
         +L + L     L+CDN +AI +A N VFH  TKHIE + H VRE+S  Q  L
Subjt:  CDLHVSLKTSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHL

ATMG00810.1 DNA/RNA polymerases superfamily protein1.2e-2253.06Show/hide
Query:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGS-FSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYW
        MH+P +  F  +KR+LRY++GT   G+   K S  ++Q FCDSDW   TS R ST+GF  FLG N ISWS+K+Q T+SRSS E EYR+LA T  +L W
Subjt:  MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGS-FSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAAACCCATTGTCATTCACTTTTCAGCCGTCAAACGCATCCTCAGATATCTCCGTGGTACTCCAACCCTTGGAATAAAATTTCGAAAAGGTTCGTTCTCTCTACA
AACCTTTTGTGATTCTGATTGGACAAGTGATACATCTGATAGATGTTCCACTTCTGGCTTCATCGCCTTCCTCGGTTCTAATCCAATATCTTGGTCTTCTAAAAAGCAAT
CTACAATCTCTCGTTCCTCCATAGAAGCAGAATATCGTTCCCTTGCCACTACTACTGTCGATCTTTACTGGATCCAACAACTTTTATGCGATCTCCATGTTTCCCTTAAG
ACATCACCAACATTATGGTGTGATAACGTTTCCGCTATATCTCTGGCTCACAATCCAGTTTTTCATGCTCACACCAAACACATTGAAATTAATTATCACTTTGTTCGGGA
AAAAAGTTCTTTGCAAAGACATCTCCGTCCGTTACATCTCTTCCAACAACCAACTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAAACCCATTGTCATTCACTTTTCAGCCGTCAAACGCATCCTCAGATATCTCCGTGGTACTCCAACCCTTGGAATAAAATTTCGAAAAGGTTCGTTCTCTCTACA
AACCTTTTGTGATTCTGATTGGACAAGTGATACATCTGATAGATGTTCCACTTCTGGCTTCATCGCCTTCCTCGGTTCTAATCCAATATCTTGGTCTTCTAAAAAGCAAT
CTACAATCTCTCGTTCCTCCATAGAAGCAGAATATCGTTCCCTTGCCACTACTACTGTCGATCTTTACTGGATCCAACAACTTTTATGCGATCTCCATGTTTCCCTTAAG
ACATCACCAACATTATGGTGTGATAACGTTTCCGCTATATCTCTGGCTCACAATCCAGTTTTTCATGCTCACACCAAACACATTGAAATTAATTATCACTTTGTTCGGGA
AAAAAGTTCTTTGCAAAGACATCTCCGTCCGTTACATCTCTTCCAACAACCAACTTGCTGA
Protein sequenceShow/hide protein sequence
MHKPIVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTFCDSDWTSDTSDRCSTSGFIAFLGSNPISWSSKKQSTISRSSIEAEYRSLATTTVDLYWIQQLLCDLHVSLK
TSPTLWCDNVSAISLAHNPVFHAHTKHIEINYHFVREKSSLQRHLRPLHLFQQPTC