; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0163171 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0163171
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr06:12360279..12361058
RNA-Seq ExpressionCmc06g0163171
SyntenyCmc06g0163171
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037234.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.6e-13599.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRR
        TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDR+
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRR

KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-13394.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDPHAIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

KAA0041601.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-13394.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDPHAIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

TYK04714.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-13394.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDPHAIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

TYK21532.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.3e-13394.21Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDP AIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

TrEMBL top hitse value%identityAlignment
A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-13494.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDPHAIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-13494.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDPHAIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

A0A5D3C0D7 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-13494.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDPHAIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

A0A5D3CTW2 Putative mitochondrial protein1.3e-13599.59Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRR
        TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDR+
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRR

A0A5D3DD70 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-13394.21Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG
        MKPPP  SSPPHKVCLLRRALYGLKQA RAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV LLLLYVDDMIITGNDP AIS+LQHYLGQHFEMKDLG
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF
        SLNYFLGLEVSR SDGYLLSQAKYASDLLA SGITDSNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT P IAY VHIVSQFMAAPRTIHF
Subjt:  SLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHF

Query:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        TAVLRILRY+KGTLGHGLQFSSQSSLVL  YSDADWAGDPTDRRSTTGYCFYLGDSLIS
Subjt:  TAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.5e-3232.82Show/hide
Query:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV---LLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMK
        M+ P  IS     VC L +A+YGLKQA R WF  F   + +  F +S  D  ++     +G +   + +LLYVDD++I   D   ++N + YL + F M 
Subjt:  MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIV---LLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMK

Query:  DLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSL-YRQLVGSLIYLTV-TCPGIAYVVHIVSQFMAAP
        DL  + +F+G+ +    D   LSQ+ Y   +L+   + + N  STPL   ++    +    ED +   R L+G L+Y+ + T P +   V+I+S++ +  
Subjt:  DLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSL-YRQLVGSLIYLTV-TCPGIAYVVHIVSQFMAAP

Query:  RTIHFTAVLRILRYIKGTLGHGLQFSSQSSL--VLFDYSDADWAGDPTDRRSTTGYCFYLGD
         +  +  + R+LRY+KGT+   L F    +    +  Y D+DWAG   DR+STTGY F + D
Subjt:  RTIHFTAVLRILRYIKGTLGHGLQFSSQSSL--VLFDYSDADWAGDPTDRRSTTGYCFYLGD

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-3537.26Show/hide
Query:  ISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLGSLNYFL
        ++   H VC L ++LYGLKQA R W+  F S +    +  +  D  ++ +   +   ++LLLYVDDM+I G D   I+ L+  L + F+MKDLG     L
Subjt:  ISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLGSLNYFL

Query:  GLEV--SRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHL-------TPYDGVPLEDVSLYRQLVGSLIYLTV-TCPGIAYVVHIVSQFMAAPR
        G+++   R S    LSQ KY   +L    + ++   STPL  ++ L       T  +   +  V  Y   VGSL+Y  V T P IA+ V +VS+F+  P 
Subjt:  GLEV--SRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHL-------TPYDGVPLEDVSLYRQLVGSLIYLTV-TCPGIAYVVHIVSQFMAAPR

Query:  TIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
          H+ AV  ILRY++GT G  L F   S  +L  Y+DAD AGD  +R+S+TGY F      IS
Subjt:  TIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

P92519 Uncharacterized mitochondrial protein AtMg008107.6e-3742.35Show/hide
Query:  LLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSL
        + LLLYVDD+++TG+    ++ L   L   F MKDLG ++YFLG+++     G  LSQ KYA  +L ++G+ D    STPL   ++ +        D S 
Subjt:  LLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSL

Query:  YRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        +R +VG+L YLT+T P I+Y V+IV Q M  P    F  + R+LRY+KGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +LG ++IS
Subjt:  YRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.3e-5445.59Show/hide
Query:  MKPPPSI--SSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKD
        M  PP       P+ VC LR+ALYGLKQA RAW+    + +  +GF +S  DT+LF     + IV  +L+YVDD++ITGNDP  + N    L Q F +KD
Subjt:  MKPPPSI--SSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKD

Query:  LGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTI
           L+YFLG+E  R   G  LSQ +Y  DLLA + +  +   +TP+ P+  L+ Y G  L D + YR +VGSL YL  T P I+Y V+ +SQFM  P   
Subjt:  LGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTI

Query:  HFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        H  A+ RILRY+ GT  HG+     ++L L  YSDADWAGD  D  ST GY  YLG   IS
Subjt:  HFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-5042.15Show/hide
Query:  MKPPPSI--SSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKD
        M  PP       P  VC LR+A+YGLKQA RAW+    + +  +GF +S  DT+LF     + I+  +L+YVDD++ITGND   + +    L Q F +K+
Subjt:  MKPPPSI--SSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKD

Query:  LGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTI
           L+YFLG+E  R   G  LSQ +Y  DLLA + +  +   +TP+  +  LT + G  L D + YR +VGSL YL  T P ++Y V+ +SQ+M  P   
Subjt:  LGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTI

Query:  HFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        H+ A+ R+LRY+ GT  HG+     ++L L  YSDADWAGD  D  ST GY  YLG   IS
Subjt:  HFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.8e-5644.15Show/hide
Query:  MKPPPSI------SSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHF
        MK PP        S PP+ VC L++++YGLKQA R WF  FS T+   GF  S  D   F + T   + L +L+YVDD+II  N+  A+  L+  L   F
Subjt:  MKPPPSI------SSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHF

Query:  EMKDLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAA
        +++DLG L YFLGLE++R + G  + Q KYA DLL  +G+     +S P+DP+V  + + G    D   YR+L+G L+YL +T   I++ V+ +SQF  A
Subjt:  EMKDLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAA

Query:  PRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        PR  H  AV++IL YIKGT+G GL +SSQ+ + L  +SDA +      RRST GYC +LG SLIS
Subjt:  PRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS

ATMG00240.1 Gag-Pol-related retrotransposon family protein2.2e-1546.84Show/hide
Query:  IYLTVTCPGIAYVVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYC
        +YLT+T P + + V+ +SQF +A RT    AV ++L Y+KGT+G GL +S+ S L L  ++D+DWA  P  RRS TG+C
Subjt:  IYLTVTCPGIAYVVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYC

ATMG00810.1 DNA/RNA polymerases superfamily protein5.4e-3842.35Show/hide
Query:  LLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSL
        + LLLYVDD+++TG+    ++ L   L   F MKDLG ++YFLG+++     G  LSQ KYA  +L ++G+ D    STPL   ++ +        D S 
Subjt:  LLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLGSLNYFLGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSL

Query:  YRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS
        +R +VG+L YLT+T P I+Y V+IV Q M  P    F  + R+LRY+KGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +LG ++IS
Subjt:  YRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCACCTCCTAGTATTTCTTCTCCTCCTCACAAGGTGTGTCTCTTGCGTCGCGCGCTATATGGCCTCAAACAGGCTCTACGAGCTTGGTTTGCCACATTT
AGCTCTACCATCACTCAACTTGGTTTTACTTCTAGTCCTCATGACACTGCGCTCTTTACTCGCCACACTCCCCAGGGTATTGTTCTTCTTCTTCTTCTCTATGTT
GATGACATGATTATCACTGGTAATGATCCACATGCCATATCCAATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGATCTTGGATCTCTCAACTACTTT
CTTGGCCTTGAAGTCTCTCGATGCTCGGACGGGTATTTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCTCACTCAGGAATCACTGACTCTAACACAGCT
TCAACGCCGTTAGATCCCAATGTTCATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGACAACTCGTTGGCAGTCTCATCTATCTAACA
GTGACTTGTCCAGGCATTGCATATGTTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCATTTTACTGCCGTACTACGTATCCTTCGCTATATC
AAGGGGACTTTGGGGCATGGACTTCAGTTTTCTTCTCAATCCTCTCTCGTATTATTTGACTATTCTGATGCAGATTGGGCTGGGGATCCCACTGATCGACGTTCT
ACAACAGGCTACTGCTTCTACTTAGGCGATTCTCTAATTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCCACCTCCTAGTATTTCTTCTCCTCCTCACAAGGTGTGTCTCTTGCGTCGCGCGCTATATGGCCTCAAACAGGCTCTACGAGCTTGGTTTGCCACATTT
AGCTCTACCATCACTCAACTTGGTTTTACTTCTAGTCCTCATGACACTGCGCTCTTTACTCGCCACACTCCCCAGGGTATTGTTCTTCTTCTTCTTCTCTATGTT
GATGACATGATTATCACTGGTAATGATCCACATGCCATATCCAATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGATCTTGGATCTCTCAACTACTTT
CTTGGCCTTGAAGTCTCTCGATGCTCGGACGGGTATTTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCTCACTCAGGAATCACTGACTCTAACACAGCT
TCAACGCCGTTAGATCCCAATGTTCATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGACAACTCGTTGGCAGTCTCATCTATCTAACA
GTGACTTGTCCAGGCATTGCATATGTTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCATTTTACTGCCGTACTACGTATCCTTCGCTATATC
AAGGGGACTTTGGGGCATGGACTTCAGTTTTCTTCTCAATCCTCTCTCGTATTATTTGACTATTCTGATGCAGATTGGGCTGGGGATCCCACTGATCGACGTTCT
ACAACAGGCTACTGCTTCTACTTAGGCGATTCTCTAATTTCTTGA
Protein sequenceShow/hide protein sequence
MKPPPSISSPPHKVCLLRRALYGLKQALRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLLYVDDMIITGNDPHAISNLQHYLGQHFEMKDLGSLNYF
LGLEVSRCSDGYLLSQAKYASDLLAHSGITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTCPGIAYVVHIVSQFMAAPRTIHFTAVLRILRYI
KGTLGHGLQFSSQSSLVLFDYSDADWAGDPTDRRSTTGYCFYLGDSLIS