CuGenDBv2

Gene ID	Cmc06g0163211
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr06:12452775..12453248
RNA-Seq Expression	Cmc06g0163211
Synteny	Cmc06g0163211
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025425.1 pol protein [Cucumis melo var. makuwa]

1.7e-81

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

KAA0041424.1 pol protein [Cucumis melo var. makuwa]

1.7e-81

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

KAA0043143.1 pol protein [Cucumis melo var. makuwa]

1.7e-81

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

KAA0043555.1 pol protein [Cucumis melo var. makuwa]

2.2e-81

93.63

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNSFQATIGMAPFEALYGK CRSP+C
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

KAA0047043.1 pol protein [Cucumis melo var. makuwa]

1.7e-81

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT0 Pol protein

8.3e-82

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

A0A5A7TDB5 Pol protein

8.3e-82

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

A0A5A7TIG2 Pol protein

8.3e-82

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

A0A5A7TQ69 Reverse transcriptase

1.1e-81

93.63

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNSFQATIGMAPFEALYGK CRSP+C
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

A0A5A7TU00 Pol protein

8.3e-82

94.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHF PGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF+PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC
        LNQV EDM RACALEFPGSWDSH HLMEFAYNNS+QATIGMAPFEALYGK CRSPVC
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.2e-23

36.49

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFIT LP +  G+  ++VVVDR +K A   P     TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY
         NQ  E + R      P +W  H  L++ +YNN+  +   M PFE ++
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY

P0CT35 Transposon Tf2-2 polyprotein

2.2e-23

36.49

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFIT LP +  G+  ++VVVDR +K A   P     TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY
         NQ  E + R      P +W  H  L++ +YNN+  +   M PFE ++
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY

P0CT36 Transposon Tf2-3 polyprotein

2.2e-23

36.49

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFIT LP +  G+  ++VVVDR +K A   P     TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY
         NQ  E + R      P +W  H  L++ +YNN+  +   M PFE ++
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY

P0CT41 Transposon Tf2-12 polyprotein

2.2e-23

36.49

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFIT LP +  G+  ++VVVDR +K A   P     TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY
         NQ  E + R      P +W  H  L++ +YNN+  +   M PFE ++
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY

Q9UR07 Transposon Tf2-11 polyprotein

2.2e-23

36.49

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER
        MDFIT LP +  G+  ++VVVDR +K A   P     TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTER

Query:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY
         NQ  E + R      P +W  H  L++ +YNN+  +   M PFE ++
Subjt:  LNQVSEDMFRACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTAATTTGGGTTGTGGTTGACAGGCTTACCAAATCAGCACACTTCTTTCCGGGTAAATCCATCTA
TACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGA
AGGGTTTGCAAACTGCTATGGGGACGAGGTTAGACTTTAGTACAGCTTTCTATCCACAGAATGATGGTCAGACTGAGCGTCTGAACCAAGTTTCAGAGGATATGTTTCGA
GCTTGTGCATTAGAATTTCCAGGTAGCTGGGACTCCCACTTTCATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACCATTGGCATGGCACCATTTGAGGCCTT
GTATGGCAAATTTTGTAGATCCCCTGTTTGCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDFITGLPRTLRGFTVIWVVVDRLTKSAHFFPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFYPQNDGQTERLNQVSEDMFR
ACALEFPGSWDSHFHLMEFAYNNSFQATIGMAPFEALYGKFCRSPVC

Cmc06g0163211 (gene) of Melon (Charmono) v1.1 genome