; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0163251 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0163251
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:12478766..12479839
RNA-Seq ExpressionCmc06g0163251
SyntenyCmc06g0163251
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.9e-16095.33Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
        WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK              TARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS

Query:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
        KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
Subjt:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.9e-15980.11Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        +T + SGSLLAQFQVRSSLV EIV RQ EDSNLQK   K K+G E EFELRTDGAIVKQGRLCVPNISELK AILEEAH+SAYAMH GSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ
        WW  MK+EIAEY+DRCLI QQVKPV+QR GG LNPL VPEWK                 G+DGIWVIVDRLT+T RFI IK+TSTLDQLA+LYVDKIVSQ
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ

Query:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR
        +GVPVSIVSDRDPRFTSKFWPS+QKAMGT LKFST+FHP+TDGQS+RTIQTLEDMLRACVLQ KG+WDTHL LMEF YNN+YQSSI MAP EALYGRPCR
Subjt:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR

Query:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
        TPVCWNEVGERKLVGPELVQ T++NIKLIRENL+ AQDRQKSY DKRRR+LEFQ+G+
Subjt:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

TYK06319.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-15980.39Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        +T K SGSLLAQFQVRSSLV EIV RQ EDSNLQK   K K+G E EFELRTDGAIVKQGRLCVPNISELK AILEEAH+SAYAMH GSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ
        WW  MK+EIAEY+DRCLI QQVKPV+QR GG LNPL VPEWK                 G+DGIWVIVDRLT+T RFI IK+TSTLDQLA+LYVDKIVSQ
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ

Query:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR
        +GVPVSIVSDRDPRFTSKFWPS+QKAMGT LKFST+FHP+TDGQS+RTIQTLEDMLRACVLQ KG+WDTHL LMEF YNN+YQSSI MAP EALYGRPCR
Subjt:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR

Query:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
        TPVCWNEVGERKLVGPELVQ T++NIKLIRENL+ AQDRQKSY DKRRR+LEFQ+G+
Subjt:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.9e-16095.33Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
        WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK              TARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS

Query:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
        KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
Subjt:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE

TYK11723.1 reverse transcriptase [Cucumis melo var. makuwa]6.6e-16383.19Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        MTA+SSGSLLAQFQVRSSLVAE VGRQ EDSNLQKMLAK KQGPE EFELRT+ AIVKQGRLCVPNIS+LKGAILEE HN AYAMH GSTKMYRTLK TY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ
        WWP MKREIAEY+DRCLI QQVK V+Q  GGLLNPL +PEWK                 GYDGIWVIVDRLT+T RFI IK TSTLDQLAKLYVD+IVSQ
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ

Query:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR
        +GVPVSIVSDRDPRFTSKF  SVQKAMGTKLKFS+ FHP+TDGQ +RTIQTLEDMLRACVLQF GNWDTHLSLMEF YNNSYQS+I MAP EALYG+PCR
Subjt:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR

Query:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
        TPVCWNEVGERKLVGPELVQ TSDNIKLIRENLKIAQDRQKSY DKR+RDLEFQIGE
Subjt:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

TrEMBL top hitse value%identityAlignment
A0A5A7T6M8 DNA/RNA polymerases superfamily protein3.3e-16095.33Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
        WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK              TARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS

Query:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
        KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
Subjt:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE

A0A5A7U2V7 Reverse transcriptase4.8e-15980.11Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        +T + SGSLLAQFQVRSSLV EIV RQ EDSNLQK   K K+G E EFELRTDGAIVKQGRLCVPNISELK AILEEAH+SAYAMH GSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ
        WW  MK+EIAEY+DRCLI QQVKPV+QR GG LNPL VPEWK                 G+DGIWVIVDRLT+T RFI IK+TSTLDQLA+LYVDKIVSQ
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ

Query:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR
        +GVPVSIVSDRDPRFTSKFWPS+QKAMGT LKFST+FHP+TDGQS+RTIQTLEDMLRACVLQ KG+WDTHL LMEF YNN+YQSSI MAP EALYGRPCR
Subjt:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR

Query:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
        TPVCWNEVGERKLVGPELVQ T++NIKLIRENL+ AQDRQKSY DKRRR+LEFQ+G+
Subjt:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

A0A5D3C7J1 Reverse transcriptase1.6e-15980.39Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        +T K SGSLLAQFQVRSSLV EIV RQ EDSNLQK   K K+G E EFELRTDGAIVKQGRLCVPNISELK AILEEAH+SAYAMH GSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ
        WW  MK+EIAEY+DRCLI QQVKPV+QR GG LNPL VPEWK                 G+DGIWVIVDRLT+T RFI IK+TSTLDQLA+LYVDKIVSQ
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ

Query:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR
        +GVPVSIVSDRDPRFTSKFWPS+QKAMGT LKFST+FHP+TDGQS+RTIQTLEDMLRACVLQ KG+WDTHL LMEF YNN+YQSSI MAP EALYGRPCR
Subjt:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR

Query:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
        TPVCWNEVGERKLVGPELVQ T++NIKLIRENL+ AQDRQKSY DKRRR+LEFQ+G+
Subjt:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

A0A5D3C867 DNA/RNA polymerases superfamily protein3.3e-16095.33Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
        WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK              TARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTS

Query:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
        KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE
Subjt:  KFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPE

A0A5D3CIH8 Reverse transcriptase3.2e-16383.19Show/hide
Query:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY
        MTA+SSGSLLAQFQVRSSLVAE VGRQ EDSNLQKMLAK KQGPE EFELRT+ AIVKQGRLCVPNIS+LKGAILEE HN AYAMH GSTKMYRTLK TY
Subjt:  MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTY

Query:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ
        WWP MKREIAEY+DRCLI QQVK V+Q  GGLLNPL +PEWK                 GYDGIWVIVDRLT+T RFI IK TSTLDQLAKLYVD+IVSQ
Subjt:  WWPDMKREIAEYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWK-----------------GYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQ

Query:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR
        +GVPVSIVSDRDPRFTSKF  SVQKAMGTKLKFS+ FHP+TDGQ +RTIQTLEDMLRACVLQF GNWDTHLSLMEF YNNSYQS+I MAP EALYG+PCR
Subjt:  HGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCR

Query:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
        TPVCWNEVGERKLVGPELVQ TSDNIKLIRENLKIAQDRQKSY DKR+RDLEFQIGE
Subjt:  TPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.1e-3224.58Show/hide
Query:  SSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTYWWPD
        +S + + Q  +      ++V     D+ L  +L    +  E   +L+    I  + ++ +PN ++L   I+++ H     +H G   +   + + + W  
Subjt:  SSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTYWWPD

Query:  MKREIAEYIDRCLIYQQVKPVKQRTGGLLNPL----------------LVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPV
        ++++I EY+  C   Q  K    +  G L P+                 +PE  GY+ ++V+VDR ++ A  +    + T +Q A+++  ++++  G P 
Subjt:  MKREIAEYIDRCLIYQQVKPVKQRTGGLLNPL----------------LVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPV

Query:  SIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYG-RPCRTPVC
         I++D D  FTS+ W          +KFS  + P+TDGQ++RT QT+E +LR         W  H+SL++ +YNN+  S+  M P E ++   P  +P+ 
Subjt:  SIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYG-RPCRTPVC

Query:  WNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDL-EFQIGE
             ++     E  Q+T    + ++E+L     + K Y D + +++ EFQ G+
Subjt:  WNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDL-EFQIGE

P0CT41 Transposon Tf2-12 polyprotein1.1e-3224.58Show/hide
Query:  SSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTYWWPD
        +S + + Q  +      ++V     D+ L  +L    +  E   +L+    I  + ++ +PN ++L   I+++ H     +H G   +   + + + W  
Subjt:  SSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTYWWPD

Query:  MKREIAEYIDRCLIYQQVKPVKQRTGGLLNPL----------------LVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPV
        ++++I EY+  C   Q  K    +  G L P+                 +PE  GY+ ++V+VDR ++ A  +    + T +Q A+++  ++++  G P 
Subjt:  MKREIAEYIDRCLIYQQVKPVKQRTGGLLNPL----------------LVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPV

Query:  SIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYG-RPCRTPVC
         I++D D  FTS+ W          +KFS  + P+TDGQ++RT QT+E +LR         W  H+SL++ +YNN+  S+  M P E ++   P  +P+ 
Subjt:  SIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYG-RPCRTPVC

Query:  WNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDL-EFQIGE
             ++     E  Q+T    + ++E+L     + K Y D + +++ EFQ G+
Subjt:  WNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDL-EFQIGE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.6e-3432.14Show/hide
Query:  PEDSNLQKMLAKVKQGPET---EFELRTDGAIVKQGRLCVPNISELKGAILEEAH-NSAYAMHLGSTKMYRTLKKTYWWPDMKREIAEYIDRCLIYQQVK
        PED +  +   K  +  ET    + L  D  I  Q RL VP   + + A++   H ++ +  H G T     +   Y+WP ++  I +YI  C+  Q +K
Subjt:  PEDSNLQKMLAKVKQGPET---EFELRTDGAIVKQGRLCVPNISELKGAILEEAH-NSAYAMHLGSTKMYRTLKKTYWWPDMKREIAEYIDRCLIYQQVK

Query:  PVKQRTGGLLNPLLVPEWKGYD-----------------GIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTSKFWPSV
          + R  GLL PL + E +  D                  I V+VDR ++ A FI  + T    QL  L    I S HG P +I SDRD R T+  +  +
Subjt:  PVKQRTGGLLNPLLVPEWKGYD-----------------GIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTSKFWPSV

Query:  QKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCW--NEVGERKLVGPELVQD
         K +G K   S+A HP+TDGQS+RTIQTL  +LRA V     NW  +L  +EF YN++   ++  +P E   G    TP     +EV  R     EL + 
Subjt:  QKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCW--NEVGERKLVGPELVQD

Query:  TSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
                +E L+ AQ   ++  ++RR+ L   IG+
Subjt:  TSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.3e-3331.85Show/hide
Query:  PEDSNLQKMLAKVKQGPET---EFELRTDGAIVKQGRLCVPNISELKGAILEEAH-NSAYAMHLGSTKMYRTLKKTYWWPDMKREIAEYIDRCLIYQQVK
        PED +  +   K  +  ET    + L  D  I  Q RL VP   + + A++   H ++ +  H G T     +   Y+WP ++  I +YI  C+  Q +K
Subjt:  PEDSNLQKMLAKVKQGPET---EFELRTDGAIVKQGRLCVPNISELKGAILEEAH-NSAYAMHLGSTKMYRTLKKTYWWPDMKREIAEYIDRCLIYQQVK

Query:  PVKQRTGGLLNPLLVPEWKGYD-----------------GIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTSKFWPSV
          + R  GLL PL + E +  D                  I V+VDR ++ A FI  + T    QL  L    I S HG P +I SDRD R T+  +  +
Subjt:  PVKQRTGGLLNPLLVPEWKGYD-----------------GIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTSKFWPSV

Query:  QKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCW--NEVGERKLVGPELVQD
         K +G K   S+A HP+TDGQS+RTIQTL  +LRA       NW  +L  +EF YN++   ++  +P E   G    TP     +EV  R     EL + 
Subjt:  QKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCW--NEVGERKLVGPELVQD

Query:  TSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE
                +E L+ AQ   ++  ++RR+ L   IG+
Subjt:  TSDNIKLIRENLKIAQDRQKSYTDKRRRDLEFQIGE

Q9UR07 Transposon Tf2-11 polyprotein1.1e-3224.58Show/hide
Query:  SSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTYWWPD
        +S + + Q  +      ++V     D+ L  +L    +  E   +L+    I  + ++ +PN ++L   I+++ H     +H G   +   + + + W  
Subjt:  SSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTYWWPD

Query:  MKREIAEYIDRCLIYQQVKPVKQRTGGLLNPL----------------LVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPV
        ++++I EY+  C   Q  K    +  G L P+                 +PE  GY+ ++V+VDR ++ A  +    + T +Q A+++  ++++  G P 
Subjt:  MKREIAEYIDRCLIYQQVKPVKQRTGGLLNPL----------------LVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPV

Query:  SIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYG-RPCRTPVC
         I++D D  FTS+ W          +KFS  + P+TDGQ++RT QT+E +LR         W  H+SL++ +YNN+  S+  M P E ++   P  +P+ 
Subjt:  SIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAFHPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYG-RPCRTPVC

Query:  WNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDL-EFQIGE
             ++     E  Q+T    + ++E+L     + K Y D + +++ EFQ G+
Subjt:  WNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKRRRDL-EFQIGE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCAAAAAGCTCAGGGAGTCTTTTAGCTCAATTTCAGGTTAGGTCTTCCTTAGTAGCAGAGATTGTAGGAAGACAGCCAGAGGATAGTAATTTGCAGAAGATGCT
TGCAAAGGTCAAGCAAGGCCCAGAGACAGAATTTGAGTTGAGAACGGATGGAGCCATAGTTAAGCAGGGAAGACTATGTGTTCCGAATATTAGTGAGCTTAAGGGTGCTA
TACTAGAAGAAGCTCATAATTCAGCTTACGCTATGCATCTAGGAAGCACCAAGATGTATAGAACTCTGAAGAAGACTTATTGGTGGCCTGATATGAAGCGAGAGATAGCT
GAATATATCGATAGATGTTTGATCTATCAACAGGTTAAACCAGTGAAGCAGAGGACAGGAGGACTCCTTAATCCCCTGCTAGTGCCAGAGTGGAAAGGATATGATGGTAT
ATGGGTAATAGTAGATAGACTCACCAGGACAGCGCGGTTTATACTGATTAAAGTGACGTCTACACTAGATCAGCTAGCTAAGTTATACGTCGACAAGATTGTGAGTCAAC
ATGGAGTGCCAGTGTCCATAGTTTCAGATAGGGACCCGAGGTTTACTTCTAAGTTTTGGCCTAGTGTGCAAAAAGCAATGGGAACAAAGTTGAAGTTCAGTACAGCGTTC
CATCCCAAGACAGATGGTCAGTCAAAGAGGACCATCCAGACCTTAGAAGACATGTTGAGAGCATGTGTCCTTCAGTTTAAGGGAAATTGGGATACCCACTTATCACTTAT
GGAGTTCACTTATAATAACAGCTACCAGTCTAGTATCGATATGGCACCATGTGAGGCTTTGTATGGCAGACCATGTAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAAC
GAAAGCTAGTTGGTCCTGAGTTAGTACAAGATACGTCAGACAATATTAAGCTGATTAGGGAAAATCTAAAAATAGCTCAGGATCGACAGAAGAGCTATACAGATAAGCGA
CGAAGAGACTTAGAGTTCCAGATTGGAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGCAAAAAGCTCAGGGAGTCTTTTAGCTCAATTTCAGGTTAGGTCTTCCTTAGTAGCAGAGATTGTAGGAAGACAGCCAGAGGATAGTAATTTGCAGAAGATGCT
TGCAAAGGTCAAGCAAGGCCCAGAGACAGAATTTGAGTTGAGAACGGATGGAGCCATAGTTAAGCAGGGAAGACTATGTGTTCCGAATATTAGTGAGCTTAAGGGTGCTA
TACTAGAAGAAGCTCATAATTCAGCTTACGCTATGCATCTAGGAAGCACCAAGATGTATAGAACTCTGAAGAAGACTTATTGGTGGCCTGATATGAAGCGAGAGATAGCT
GAATATATCGATAGATGTTTGATCTATCAACAGGTTAAACCAGTGAAGCAGAGGACAGGAGGACTCCTTAATCCCCTGCTAGTGCCAGAGTGGAAAGGATATGATGGTAT
ATGGGTAATAGTAGATAGACTCACCAGGACAGCGCGGTTTATACTGATTAAAGTGACGTCTACACTAGATCAGCTAGCTAAGTTATACGTCGACAAGATTGTGAGTCAAC
ATGGAGTGCCAGTGTCCATAGTTTCAGATAGGGACCCGAGGTTTACTTCTAAGTTTTGGCCTAGTGTGCAAAAAGCAATGGGAACAAAGTTGAAGTTCAGTACAGCGTTC
CATCCCAAGACAGATGGTCAGTCAAAGAGGACCATCCAGACCTTAGAAGACATGTTGAGAGCATGTGTCCTTCAGTTTAAGGGAAATTGGGATACCCACTTATCACTTAT
GGAGTTCACTTATAATAACAGCTACCAGTCTAGTATCGATATGGCACCATGTGAGGCTTTGTATGGCAGACCATGTAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAAC
GAAAGCTAGTTGGTCCTGAGTTAGTACAAGATACGTCAGACAATATTAAGCTGATTAGGGAAAATCTAAAAATAGCTCAGGATCGACAGAAGAGCTATACAGATAAGCGA
CGAAGAGACTTAGAGTTCCAGATTGGAGAATAA
Protein sequenceShow/hide protein sequence
MTAKSSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSAYAMHLGSTKMYRTLKKTYWWPDMKREIA
EYIDRCLIYQQVKPVKQRTGGLLNPLLVPEWKGYDGIWVIVDRLTRTARFILIKVTSTLDQLAKLYVDKIVSQHGVPVSIVSDRDPRFTSKFWPSVQKAMGTKLKFSTAF
HPKTDGQSKRTIQTLEDMLRACVLQFKGNWDTHLSLMEFTYNNSYQSSIDMAPCEALYGRPCRTPVCWNEVGERKLVGPELVQDTSDNIKLIRENLKIAQDRQKSYTDKR
RRDLEFQIGE