CuGenDBv2

Gene ID	Cmc06g0163281
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	SWIM-type domain-containing protein
Genome location	CMiso1.1chr06:12599356..12599932
RNA-Seq Expression	Cmc06g0163281
Synteny	Cmc06g0163281
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR006564 - Zinc finger, PMZ-type IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036930.1 uncharacterized protein E6C27_scaffold86G00020 [Cucumis melo var. makuwa]

1.3e-73

90.26

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVD GKN LVKLNCNSCSCLFWDLEEI C HALIVIRSLNLNPYAFVSQYYY T+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKR+IPSIG+VSKSSKCSRCK   HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

KAA0042333.1 uncharacterized protein E6C27_scaffold795G00290 [Cucumis melo var. makuwa]

1.8e-75

92.21

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVDEGKN LVKLNCNSCSCLFWDLE+IPCVHALIVIRSLNLNPYAFVS YYYAT+L ATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKRRIPS GEVSKSSKCSRCK A HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

KAA0046918.1 uncharacterized protein E6C27_scaffold230G00860 [Cucumis melo var. makuwa]

1.5e-74

91.56

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLS WAEGLIRKL+DESRSFIVNP+SEVEFQVVD GKN LVKLNCNSCSCLFWDLEEIPC  ALIVIRSLNLNPYAFVSQYYYAT+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKRRIPSIGEVSKSSKCSRCK A HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]

8.2e-76

92.86

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVD GKN LVKLNCNSCSCLFWDLEEIPC HALIVIRSLNLNPYAFVSQYYYAT+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVV VN+NILP VFR PAGRPRKRRIPSIGEVSKSSKCSRCK A HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]

8.2e-76

92.86

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVD GKN LVKLNCNSCSCLFWDLEEIPC HALIVIRSLNLNPYAFVSQYYYAT+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKRRIPSIGEVSKSSKCSRCK   HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGH6 SWIM-type domain-containing protein

8.8e-76

92.21

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVDEGKN LVKLNCNSCSCLFWDLE+IPCVHALIVIRSLNLNPYAFVS YYYAT+L ATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKRRIPS GEVSKSSKCSRCK A HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

A0A5A7TVL2 ZnF_PMZ domain-containing protein

7.4e-75

91.56

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLS WAEGLIRKL+DESRSFIVNP+SEVEFQVVD GKN LVKLNCNSCSCLFWDLEEIPC  ALIVIRSLNLNPYAFVSQYYYAT+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKRRIPSIGEVSKSSKCSRCK A HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

A0A5D3BD68 SWIM-type domain-containing protein

3.9e-76

92.86

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVD GKN LVKLNCNSCSCLFWDLEEIPC HALIVIRSLNLNPYAFVSQYYYAT+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVV VN+NILP VFR PAGRPRKRRIPSIGEVSKSSKCSRCK A HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

A0A5D3BEQ2 SWIM-type domain-containing protein

6.3e-74

90.26

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVD GKN LVKLNCNSCSCLFWDLEEI C HALIVIRSLNLNPYAFVSQYYY T+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKR+IPSIG+VSKSSKCSRCK   HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

A0A5D3BVP4 SWIM-type domain-containing protein

3.9e-76

92.86

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Query:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP
        LKSVLSSWAEGLIRKL+DESRSFIVNPVSEVEFQVVD GKN LVKLNCNSCSCLFWDLEEIPC HALIVIRSLNLNPYAFVSQYYYAT+LSATYGGLVRP
Subjt:  LKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRP

Query:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN
        IGNHTDWSVVEVN+NILP VFR PAGRPRKRRIPSIGEVSKSSKCSRCK   HN
Subjt:  IGNHTDWSVVEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49920.1 MuDR family transposase

1.2e-05

28.05

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Query:  LVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRPIGNHTDWSVVEVNNNILPSVFRCP
        +V+LN  +C+C  +   + PC+HAL V   L +NP  +V   Y       TY     P+   + W        ++P V   P
Subjt:  LVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRPIGNHTDWSVVEVNNNILPSVFRCP

AT1G64260.1 MuDR family transposase

2.9e-07

24.58

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Query:  LKSVLSSWAEGLI---------RKLIDESRSFIVNPVSEVEFQVVD--EGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATL
        L S+ SS   G++          + + +S  +++  +    F+V +  E +  +V+LN ++C+C  +   + PC+HAL V   L +NP  +V + Y    
Subjt:  LKSVLSSWAEGLI---------RKLIDESRSFIVNPVSEVEFQVVD--EGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATL

Query:  LSATYGGLVRPIGNHTDW
           TY     P+ +   W
Subjt:  LSATYGGLVRPIGNHTDW

Sequences

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CDS sequence

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ATGTTAAAGAGTGTTTTGAGTTCTTGGGCTGAAGGACTAATAAGAAAGCTAATTGATGAATCAAGAAGCTTCATTGTGAATCCTGTGAGTGAAGTTGAATTTCAAGTAGT
TGATGAAGGCAAGAATATTTTAGTAAAGTTGAATTGTAATAGCTGCAGTTGTCTTTTTTGGGATCTAGAAGAAATTCCATGTGTTCATGCTCTTATTGTGATTCGTAGTC
TTAATTTGAATCCTTATGCGTTCGTTTCACAATATTATTATGCTACTTTATTGTCTGCAACTTATGGTGGTTTAGTTCGTCCGATTGGTAACCATACTGATTGGAGTGTT
GTGGAGGTGAACAACAATATATTGCCTTCAGTATTTAGATGTCCAGCAGGAAGGCCTCGAAAAAGAAGGATTCCTTCTATTGGTGAAGTTTCAAAGAGCTCAAAATGTAG
TCGTTGTAAGACAGCTGATCATAATTGA

mRNA sequence

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Protein sequence

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MLKSVLSSWAEGLIRKLIDESRSFIVNPVSEVEFQVVDEGKNILVKLNCNSCSCLFWDLEEIPCVHALIVIRSLNLNPYAFVSQYYYATLLSATYGGLVRPIGNHTDWSV
VEVNNNILPSVFRCPAGRPRKRRIPSIGEVSKSSKCSRCKTADHN

Cmc06g0163281 (gene) of Melon (Charmono) v1.1 genome