; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0163301 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0163301
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:12621349..12622509
RNA-Seq ExpressionCmc06g0163301
SyntenyCmc06g0163301
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025917.1 pol protein [Cucumis melo var. makuwa]2.1e-19788.34Show/hide
Query:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ
        MYQDLR VYWWR MKR+VA FVSRCLVCQQVKAP Q P GLLQPLSVPGWKWESVSMDFIT L KTLKGY VIWVVVDRLTK+AHFVP KSTYTASKWGQ
Subjt:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ

Query:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF
        LY+TEIVRL+GVPVSIV  RDA FTSKFW+GLQLALGTRLDFS AFH +TDGQTERLNQ+LEDMLRA VLEFSGSWDSHLHLMEFAYNNSY+ATI MAPF
Subjt:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF

Query:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ
        EALYGKCCRSPVCWG VGEQRMLGP+LVQTTNAAIQ+IRARML AQSRQKSYADVRRKDLEF+VGDMVFLKVA +KGVLRFEKKGKLSPRFVGPFEILE+
Subjt:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ

Query:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        IGPVAYRLALPPSLSAVHDVFHVSMLR+YVADPTH++DFEPLQ+SENLS+EEQ +EILARE+KKLR+R+I LVKVLW+NHGVEEAT
Subjt:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

KAA0025998.1 pol protein [Cucumis melo var. makuwa]2.7e-19788.08Show/hide
Query:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ
        MYQDLR VYWWR MKR+VA+FVSRCLVCQQVKAP Q P GLLQPLSVPGWKWESVSMDFIT L KTLKGY VIWVVVDRLTKSAHFVP KSTYTASKWGQ
Subjt:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ

Query:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF
        LY+TEIVRL+GVPVSIV  RDA FTSKFWKGLQ+ALGTRLDFS AFH +TDGQTERLNQ+LEDMLRA VLEFSGSWDSHLHLMEFAYNNSY+ATI MAPF
Subjt:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF

Query:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ
        EALYGKCCRSPVCWG VGEQRMLGP+LVQTTNAAIQ+IRARML AQSRQKSYADVRRKDLEF+VGDMVFLKVA +KGVLRF KKGKLSPRFVGPFEILE+
Subjt:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ

Query:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        IGPVAYRLALPPS +AVHDVFH+SMLRKYVADPTHV+DFEPLQ+SENLS+EEQ +E+LAREVKKLR+REI LVK+LW+NHGVEEAT
Subjt:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

KAA0043088.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-20399.72Show/hide
Query:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
        +VKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
Subjt:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW

Query:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
        KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
Subjt:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ

Query:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
        TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
Subjt:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY

Query:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
Subjt:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

TYJ97214.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-20399.72Show/hide
Query:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
        +VKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
Subjt:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW

Query:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
        KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
Subjt:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ

Query:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
        TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
Subjt:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY

Query:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
Subjt:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

TYK20443.1 pol protein [Cucumis melo var. makuwa]2.7e-19788.08Show/hide
Query:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ
        MYQDLR VYWWR MKR+VA+FVSRCLVCQQVKAP Q P GLLQPLSVPGWKWESVSMDFIT L KTLKGY VIWVVVDRLTKSAHFVP KSTYTASKWGQ
Subjt:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ

Query:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF
        LY+TEIVRL+GVPVSIV  RDA FTSKFWKGLQ+ALGTRLDFS AFH +TDGQTERLNQ+LEDMLRA VLEFSGSWDSHLHLMEFAYNNSY+ATI MAPF
Subjt:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF

Query:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ
        EALYGKCCRSPVCWG VGEQRMLGP+LVQTTNAAIQ+IRARML AQSRQKSYADVRRKDLEF+VGDMVFLKVA +KGVLRF KKGKLSPRFVGPFEILE+
Subjt:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ

Query:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        IGPVAYRLALPPS +AVHDVFH+SMLRKYVADPTHV+DFEPLQ+SENLS+EEQ +E+LAREVKKLR+REI LVK+LW+NHGVEEAT
Subjt:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

TrEMBL top hitse value%identityAlignment
A0A5A7SIJ5 Reverse transcriptase1.3e-19788.08Show/hide
Query:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ
        MYQDLR VYWWR MKR+VA+FVSRCLVCQQVKAP Q P GLLQPLSVPGWKWESVSMDFIT L KTLKGY VIWVVVDRLTKSAHFVP KSTYTASKWGQ
Subjt:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ

Query:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF
        LY+TEIVRL+GVPVSIV  RDA FTSKFWKGLQ+ALGTRLDFS AFH +TDGQTERLNQ+LEDMLRA VLEFSGSWDSHLHLMEFAYNNSY+ATI MAPF
Subjt:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF

Query:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ
        EALYGKCCRSPVCWG VGEQRMLGP+LVQTTNAAIQ+IRARML AQSRQKSYADVRRKDLEF+VGDMVFLKVA +KGVLRF KKGKLSPRFVGPFEILE+
Subjt:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ

Query:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        IGPVAYRLALPPS +AVHDVFH+SMLRKYVADPTHV+DFEPLQ+SENLS+EEQ +E+LAREVKKLR+REI LVK+LW+NHGVEEAT
Subjt:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

A0A5A7TJV2 Reverse transcriptase1.2e-20399.72Show/hide
Query:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
        +VKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
Subjt:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW

Query:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
        KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
Subjt:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ

Query:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
        TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
Subjt:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY

Query:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
Subjt:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

A0A5A7TP01 Reverse transcriptase1.0e-19788.34Show/hide
Query:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ
        MYQDLR VYWWR MKR+VA FVSRCLVCQQVKAP Q P GLLQPLSVPGWKWESVSMDFIT L KTLKGY VIWVVVDRLTK+AHFVP KSTYTASKWGQ
Subjt:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ

Query:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF
        LY+TEIVRL+GVPVSIV  RDA FTSKFW+GLQLALGTRLDFS AFH +TDGQTERLNQ+LEDMLRA VLEFSGSWDSHLHLMEFAYNNSY+ATI MAPF
Subjt:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF

Query:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ
        EALYGKCCRSPVCWG VGEQRMLGP+LVQTTNAAIQ+IRARML AQSRQKSYADVRRKDLEF+VGDMVFLKVA +KGVLRFEKKGKLSPRFVGPFEILE+
Subjt:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ

Query:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        IGPVAYRLALPPSLSAVHDVFHVSMLR+YVADPTH++DFEPLQ+SENLS+EEQ +EILARE+KKLR+R+I LVKVLW+NHGVEEAT
Subjt:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

A0A5D3BDY6 Reverse transcriptase1.2e-20399.72Show/hide
Query:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
        +VKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW
Subjt:  QVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLYGVPVSIVPVRDACFTSKFW

Query:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
        KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ
Subjt:  KGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQRMLGPKLVQ

Query:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
        TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY
Subjt:  TTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKY

Query:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
Subjt:  VADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

A0A5D3BTN0 Reverse transcriptase1.3e-19788.08Show/hide
Query:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ
        MYQDLR VYWWR MKR+VA+FVSRCLVCQQVKAP Q P GLLQPLSVPGWKWESVSMDFIT L KTLKGY VIWVVVDRLTKSAHFVP KSTYTASKWGQ
Subjt:  MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQ

Query:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF
        LY+TEIVRL+GVPVSIV  RDA FTSKFWKGLQ+ALGTRLDFS AFH +TDGQTERLNQ+LEDMLRA VLEFSGSWDSHLHLMEFAYNNSY+ATI MAPF
Subjt:  LYITEIVRLYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPF

Query:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ
        EALYGKCCRSPVCWG VGEQRMLGP+LVQTTNAAIQ+IRARML AQSRQKSYADVRRKDLEF+VGDMVFLKVA +KGVLRF KKGKLSPRFVGPFEILE+
Subjt:  EALYGKCCRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQ

Query:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT
        IGPVAYRLALPPS +AVHDVFH+SMLRKYVADPTHV+DFEPLQ+SENLS+EEQ +E+LAREVKKLR+REI LVK+LW+NHGVEEAT
Subjt:  IGPVAYRLALPPSLSAVHDVFHVSMLRKYVADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.6e-4533.02Show/hide
Query:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR
        + W+ +++++  +V  C  CQ  K+   +P G LQP+      WES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++   ++ 
Subjt:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR

Query:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC
         +G P  I+   D  FTS+ WK         + FS+ +  +TDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++    
Subjt:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC

Query:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY
          SP+      ++     +  Q T    Q ++  +     + K Y D++ +++ EF  GD+V +K  T  G L   K  KL+P F GPF +L++ GP  Y
Subjt:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY

Query:  RLALPPSLSAV-HDVFHVSMLRKY
         L LP S+  +    FHVS L KY
Subjt:  RLALPPSLSAV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein6.6e-4533.02Show/hide
Query:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR
        + W+ +++++  +V  C  CQ  K+   +P G LQP+      WES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++   ++ 
Subjt:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR

Query:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC
         +G P  I+   D  FTS+ WK         + FS+ +  +TDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++    
Subjt:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC

Query:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY
          SP+      ++     +  Q T    Q ++  +     + K Y D++ +++ EF  GD+V +K  T  G L   K  KL+P F GPF +L++ GP  Y
Subjt:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY

Query:  RLALPPSLSAV-HDVFHVSMLRKY
         L LP S+  +    FHVS L KY
Subjt:  RLALPPSLSAV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein6.6e-4533.02Show/hide
Query:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR
        + W+ +++++  +V  C  CQ  K+   +P G LQP+      WES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++   ++ 
Subjt:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR

Query:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC
         +G P  I+   D  FTS+ WK         + FS+ +  +TDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++    
Subjt:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC

Query:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY
          SP+      ++     +  Q T    Q ++  +     + K Y D++ +++ EF  GD+V +K  T  G L   K  KL+P F GPF +L++ GP  Y
Subjt:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY

Query:  RLALPPSLSAV-HDVFHVSMLRKY
         L LP S+  +    FHVS L KY
Subjt:  RLALPPSLSAV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein6.6e-4533.02Show/hide
Query:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR
        + W+ +++++  +V  C  CQ  K+   +P G LQP+      WES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++   ++ 
Subjt:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR

Query:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC
         +G P  I+   D  FTS+ WK         + FS+ +  +TDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++    
Subjt:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC

Query:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY
          SP+      ++     +  Q T    Q ++  +     + K Y D++ +++ EF  GD+V +K  T  G L   K  KL+P F GPF +L++ GP  Y
Subjt:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY

Query:  RLALPPSLSAV-HDVFHVSMLRKY
         L LP S+  +    FHVS L KY
Subjt:  RLALPPSLSAV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein6.6e-4533.02Show/hide
Query:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR
        + W+ +++++  +V  C  CQ  K+   +P G LQP+      WES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++   ++ 
Subjt:  YWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVR

Query:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC
         +G P  I+   D  FTS+ WK         + FS+ +  +TDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++    
Subjt:  LYGVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYG-KC

Query:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY
          SP+      ++     +  Q T    Q ++  +     + K Y D++ +++ EF  GD+V +K  T  G L   K  KL+P F GPF +L++ GP  Y
Subjt:  CRSPVCWGGVGEQRMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDL-EFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAY

Query:  RLALPPSLSAV-HDVFHVSMLRKY
         L LP S+  +    FHVS L KY
Subjt:  RLALPPSLSAV-HDVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAAACTTTGTCAGTAGATGCTTGGTATGCCAGCAGGTGAAAGCACCTACACAGAG
ACCAACAGGGCTGTTGCAACCCTTGAGTGTGCCAGGATGGAAATGGGAGAGCGTGTCGATGGACTTCATTACAGAACTGTCCAAGACCCTAAAGGGCTATATAGTCATTT
GGGTTGTTGTCGACAGACTCACAAAGTCAGCCCACTTTGTTCCATGGAAATCTACTTACACTGCCAGTAAGTGGGGGCAGTTATATATAACGGAGATAGTGAGACTGTAT
GGAGTACCCGTATCTATCGTTCCAGTCAGAGATGCTTGTTTCACATCGAAGTTCTGGAAAGGACTTCAGCTAGCCTTGGGCACGAGGCTAGACTTCAGTATAGCTTTTCA
TTCCAAGACTGACGGTCAAACAGAGAGGTTAAACCAAGTTTTGGAAGATATGCTGCGAGCCCGTGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTGCACTTGATGG
AATTCGCCTATAATAACAGTTACGAGGCTACCATCGACATGGCACCATTCGAGGCTCTGTATGGTAAGTGTTGTAGGTCTCCTGTTTGTTGGGGTGGAGTTGGTGAGCAG
AGAATGCTAGGTCCCAAGTTAGTTCAGACCACCAACGCAGCCATCCAGGAGATTAGAGCTCGTATGTTGGCAGCTCAGAGCAGACAGAAGAGTTATGCTGATGTACGACG
TAAGGATCTGGAGTTTGATGTGGGAGACATGGTCTTTTTGAAGGTAGCAACTGTGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGCAAGTTAAGTCCGCGTTTTGTAGGGC
CATTTGAGATACTGGAGCAAATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCTCTTTCTGCAGTGCATGACGTATTCCATGTTTCCATGCTGAGGAAGTATGTC
GCAGATCCGACGCATGTAATGGACTTCGAGCCATTGCAACTTAGTGAGAACTTGAGCTTCGAGGAACAGCTTATTGAGATTTTGGCAAGGGAGGTCAAGAAGCTTCGTAA
TCGAGAAATTTCACTAGTCAAAGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTACCAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAAACTTTGTCAGTAGATGCTTGGTATGCCAGCAGGTGAAAGCACCTACACAGAG
ACCAACAGGGCTGTTGCAACCCTTGAGTGTGCCAGGATGGAAATGGGAGAGCGTGTCGATGGACTTCATTACAGAACTGTCCAAGACCCTAAAGGGCTATATAGTCATTT
GGGTTGTTGTCGACAGACTCACAAAGTCAGCCCACTTTGTTCCATGGAAATCTACTTACACTGCCAGTAAGTGGGGGCAGTTATATATAACGGAGATAGTGAGACTGTAT
GGAGTACCCGTATCTATCGTTCCAGTCAGAGATGCTTGTTTCACATCGAAGTTCTGGAAAGGACTTCAGCTAGCCTTGGGCACGAGGCTAGACTTCAGTATAGCTTTTCA
TTCCAAGACTGACGGTCAAACAGAGAGGTTAAACCAAGTTTTGGAAGATATGCTGCGAGCCCGTGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTGCACTTGATGG
AATTCGCCTATAATAACAGTTACGAGGCTACCATCGACATGGCACCATTCGAGGCTCTGTATGGTAAGTGTTGTAGGTCTCCTGTTTGTTGGGGTGGAGTTGGTGAGCAG
AGAATGCTAGGTCCCAAGTTAGTTCAGACCACCAACGCAGCCATCCAGGAGATTAGAGCTCGTATGTTGGCAGCTCAGAGCAGACAGAAGAGTTATGCTGATGTACGACG
TAAGGATCTGGAGTTTGATGTGGGAGACATGGTCTTTTTGAAGGTAGCAACTGTGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGCAAGTTAAGTCCGCGTTTTGTAGGGC
CATTTGAGATACTGGAGCAAATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCTCTTTCTGCAGTGCATGACGTATTCCATGTTTCCATGCTGAGGAAGTATGTC
GCAGATCCGACGCATGTAATGGACTTCGAGCCATTGCAACTTAGTGAGAACTTGAGCTTCGAGGAACAGCTTATTGAGATTTTGGCAAGGGAGGTCAAGAAGCTTCGTAA
TCGAGAAATTTCACTAGTCAAAGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATAG
Protein sequenceShow/hide protein sequence
MYQDLRCVYWWRNMKREVANFVSRCLVCQQVKAPTQRPTGLLQPLSVPGWKWESVSMDFITELSKTLKGYIVIWVVVDRLTKSAHFVPWKSTYTASKWGQLYITEIVRLY
GVPVSIVPVRDACFTSKFWKGLQLALGTRLDFSIAFHSKTDGQTERLNQVLEDMLRARVLEFSGSWDSHLHLMEFAYNNSYEATIDMAPFEALYGKCCRSPVCWGGVGEQ
RMLGPKLVQTTNAAIQEIRARMLAAQSRQKSYADVRRKDLEFDVGDMVFLKVATVKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSLSAVHDVFHVSMLRKYV
ADPTHVMDFEPLQLSENLSFEEQLIEILAREVKKLRNREISLVKVLWRNHGVEEAT