| GenBank top hits | e value | %identity | Alignment |
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| KAA0033091.1 putative Gag-pol protein [Cucumis melo var. makuwa] | 6.1e-98 | 81.03 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYR+LNKVTVKN YPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLRI DS IPKTAFRSRYEHY+FIVMSFGLTNA A+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
IVFIDDILIYSKTEAEHEEHLHQ VSFLGHVVSSEGVSVDPAKIEAIT+WPRSSTVSEIRSFLGLAGYY RF+EDFSR
Subjt: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
Query: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
IASPLTQLTRKGTPFVW+ ESSFQ+ + L
Subjt: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
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| KAA0046133.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 2.0e-101 | 89.47 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYR+LNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI DSDIPKTAFRSR+ HY+FIVMSFGLTNA AVFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIE +T+WPR STVSEIRSFLGLAGYY RF+EDFSRIASPLTQLTRKGTPFVW+P ES
Subjt: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
Query: SFQDSSRSL
SFQ+ + L
Subjt: SFQDSSRSL
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| KAA0046150.1 pol protein [Cucumis melo var. makuwa] | 2.1e-98 | 86.6 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYR+LNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRS YHQLRI DSDIPKTAFRSRY HY+F+VMSFGLTNA VFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
IVFIDDILIYSKTEAEHEEHLHQV+FL HVV SEGVSVDPAKIEA+T+WPR STVSEIRSFLGLAGYY RF+EDF RIA+PLTQLTRKGTPFVW+P ES
Subjt: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
Query: SFQDSSRSL
SFQ+ + L
Subjt: SFQDSSRSL
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| KAA0067502.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 6.1e-98 | 80.6 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYRKLNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI D DIPKTAFRSRY HY+F+VMSFGLTNA AVFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
IVFIDDILIYSKTEAEHEEHLHQ V+FLGHVVSSEGVSVDPAKIEA+T+WPR STVSEIRSFLGLAGYY RF+EDFSR
Subjt: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
Query: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
IASPLTQLTRKGTPFVW+P ESSFQ+ + L
Subjt: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
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| TYK22443.1 pol protein [Cucumis melo var. makuwa] | 6.1e-98 | 80.6 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYRKLNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI D DIPKTAFRSRY HY+F+VMSFGLTNA AVFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
IVFIDDILIYSKTEAEHEEHLHQ V+FLGHVVSSEGVSVDPAKIEA+T+WPR STVSEIRSFLGLAGYY RF+EDFSR
Subjt: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
Query: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
IASPLTQLTRKGTPFVW+P ESSFQ+ + L
Subjt: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SUC9 Putative Gag-pol protein | 2.9e-98 | 81.03 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYR+LNKVTVKN YPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLRI DS IPKTAFRSRYEHY+FIVMSFGLTNA A+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
IVFIDDILIYSKTEAEHEEHLHQ VSFLGHVVSSEGVSVDPAKIEAIT+WPRSSTVSEIRSFLGLAGYY RF+EDFSR
Subjt: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
Query: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
IASPLTQLTRKGTPFVW+ ESSFQ+ + L
Subjt: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
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| A0A5A7TRD6 Ty3-gypsy retrotransposon protein | 9.8e-102 | 89.47 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYR+LNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI DSDIPKTAFRSR+ HY+FIVMSFGLTNA AVFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIE +T+WPR STVSEIRSFLGLAGYY RF+EDFSRIASPLTQLTRKGTPFVW+P ES
Subjt: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
Query: SFQDSSRSL
SFQ+ + L
Subjt: SFQDSSRSL
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| A0A5A7TSL8 Pol protein | 1.0e-98 | 86.6 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYR+LNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRS YHQLRI DSDIPKTAFRSRY HY+F+VMSFGLTNA VFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
IVFIDDILIYSKTEAEHEEHLHQV+FL HVV SEGVSVDPAKIEA+T+WPR STVSEIRSFLGLAGYY RF+EDF RIA+PLTQLTRKGTPFVW+P ES
Subjt: IVFIDDILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRIASPLTQLTRKGTPFVWNPTRES
Query: SFQDSSRSL
SFQ+ + L
Subjt: SFQDSSRSL
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| A0A5A7VGL6 Reverse transcriptase | 2.9e-98 | 80.6 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYRKLNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI D DIPKTAFRSRY HY+F+VMSFGLTNA AVFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
IVFIDDILIYSKTEAEHEEHLHQ V+FLGHVVSSEGVSVDPAKIEA+T+WPR STVSEIRSFLGLAGYY RF+EDFSR
Subjt: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
Query: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
IASPLTQLTRKGTPFVW+P ESSFQ+ + L
Subjt: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
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| A0A5D3DFW6 Reverse transcriptase | 2.9e-98 | 80.6 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
MRLCIDYRKLNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRI D DIPKTAFRSRY HY+F+VMSFGLTNA AVFMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
IVFIDDILIYSKTEAEHEEHLHQ V+FLGHVVSSEGVSVDPAKIEA+T+WPR STVSEIRSFLGLAGYY RF+EDFSR
Subjt: IVFIDDILIYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
Query: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
IASPLTQLTRKGTPFVW+P ESSFQ+ + L
Subjt: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04323 Retrovirus-related Pol polyprotein from transposon 17.6 | 1.5e-38 | 34.96 | Show/hide |
Query: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
R+ IDYRKLN++TV + +P+P +D++ +L F+ IDL G+HQ+ ++ + KTAF +++ HY+++ M FGL NA A F MN + + L+ +
Subjt: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
Query: VFIDDILIYSKTEAEHEEHL-----------------------HQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
V++DDI+++S + EH + L + +FLGHV++ +G+ +P KIEAI +P + EI++FLGL GYY +F+ +F+ I
Subjt: VFIDDILIYSKTEAEHEEHL-----------------------HQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
Query: ASPLTQLTRKGTPF-VWNPTRESSFQ
A P+T+ +K NP +S+F+
Subjt: ASPLTQLTRKGTPF-VWNPTRESSFQ
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| P0CT41 Transposon Tf2-12 polyprotein | 8.4e-34 | 31.47 | Show/hide |
Query: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
+R+ +DY+ LNK N YPLP I+ L ++QG+T+F+K+DL+S YH +R+ D K AFR ++++VM +G++ A A F +N + + ++ V
Subjt: MRLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFV
Query: IVFIDDILIYSKTEAEH-----------------------EEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
+ ++DDILI+SK+E+EH E H QV F+G+ +S +G + I+ + W + E+R FLG Y +F+ S+
Subjt: IVFIDDILIYSKTEAEH-----------------------EEHLHQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSR
Query: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
+ PL L +K + W PT+ + ++ + L
Subjt: IASPLTQLTRKGTPFVWNPTRESSFQDSSRSL
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| P10401 Retrovirus-related Pol polyprotein from transposon gypsy | 9.0e-36 | 33.9 | Show/hide |
Query: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
RL ID+RKLN+ T+ + YP+P I + L A F+ +DL+SGYHQ+ + + D KT+F Y+F + FGL NAS++F ++ V ++ +
Subjt: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
Query: VFIDDILIYSKTEAEHEEHL-----------------------HQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
V++DD++I+S+ E++H H+ V +LG +VS +G DP K++AI +P V ++RSFLGLA YY F++DF+ I
Subjt: VFIDDILIYSKTEAEHEEHL-----------------------HQVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
Query: ASPLTQLTR-----------KGTPFVWNPTRESSFQ
A P+T + + K P +N T+ ++FQ
Subjt: ASPLTQLTR-----------KGTPFVWNPTRESSFQ
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| P20825 Retrovirus-related Pol polyprotein from transposon 297 | 1.9e-38 | 35.85 | Show/hide |
Query: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
R+ IDYRKLN++T+ + YP+P +D++ +L F+ IDL G+HQ+ +++ I KTAF ++ HY+++ M FGL NA A F MN + + L+ +
Subjt: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
Query: VFIDDILIYSKTEAEHEEHLH-----------------------QVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
V++DDI+I+S + EH + + +FLGH+V+ +G+ +P K++AI S+P + EIR+FLGL GYY +F+ +++ I
Subjt: VFIDDILIYSKTEAEHEEHLH-----------------------QVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
Query: ASPLTQLTRKGT
A P+T +K T
Subjt: ASPLTQLTRKGT
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| Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus | 2.1e-37 | 34.93 | Show/hide |
Query: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
R+ +D+++LN VT+ + YP+P I+ L A F+ +DL SG+HQ+ +++SDIPKTAF + Y+F+ + FGL NA A+F +++ + ++ +
Subjt: RLCIDYRKLNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIEDSDIPKTAFRSRYEHYKFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVI
Query: VFIDDILIYSKTEAEHEEHLH-----------------------QVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
V+IDDI+++S+ H ++L QV FLG++V+++G+ DP K+ AI+ P ++V E++ FLG+ YY +F++D++++
Subjt: VFIDDILIYSKTEAEHEEHLH-----------------------QVSFLGHVVSSEGVSVDPAKIEAITSWPRSSTVSEIRSFLGLAGYYWRFMEDFSRI
Query: ASPLTQLTR
A PLT LTR
Subjt: ASPLTQLTR
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