CuGenDBv2

Gene ID	Cmc06g0163901
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Genome location	CMiso1.1chr06:13952737..13954110
RNA-Seq Expression	Cmc06g0163901
Synteny	Cmc06g0163901
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060763.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.8e-222

89.46

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLSPRAQTKSIYKRELMAVVLSVQK     +G+     +  + L+ L+  +                        GLQNKTVDALSRKDTTLELQ
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
        TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQTKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISDR
        KRYVEQCEICQTKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISDR
Subjt:  KRYVEQCEICQTKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISDR

Query:  DKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLR
        DKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLR
Subjt:  DKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLR

TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-216

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-216

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

TYK27058.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-216

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-216

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BBH7 Ty3/gypsy retrotransposon protein

5.2e-217

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

A0A5D3BR63 Ty3-gypsy retrotransposon protein

1.8e-222

89.46

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLSPRAQTKSIYKRELMAVVLSVQK     +G+     +  + L+ L+  +                        GLQNKTVDALSRKDTTLELQ
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
        TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQTKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISDR
        KRYVEQCEICQTKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISDR
Subjt:  KRYVEQCEICQTKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISDR

Query:  DKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLR
        DKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLR
Subjt:  DKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLR

A0A5D3DWA9 Ty3/gypsy retrotransposon protein

5.2e-217

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

A0A5D3DZK6 Ty3/gypsy retrotransposon protein

5.2e-217

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

A0A5D3E325 Ty3/gypsy retrotransposon protein

5.2e-217

82.71

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI
        MLQWP+PKD+TGLRGFL L GYYRRFVK YGEI AP+TKLLQKN+FKWD  ATLAFE+LK AM+TI VLALP+WSLPF++ETDASGSGLGAVLSQN +PI
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPI

Query:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ
        AFFSQKLS RAQ KSIY+RELMAVVLSVQKWR YLLGRRFTIM  QKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK  DALSR D ++EL+
Subjt:  AFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQ

Query:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI
         ++TTGIVDME V KEVEK  EL  +++QLQ NP +EGKY   NG L+YK RVVLS SSS+IPSLLHTFHDSILGGHSGFLRTYK MSGEL W GMK DI
Subjt:  TMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADI

Query:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD
        K+YVEQCEICQ  K EATKPAGVLQP+PIPDR+LEDWTMDFIEGLPKAGG+NVIMVVVDRLSKYAYF+T+KHPFSAKQVA EFIDKIVRRHGIPKSIISD
Subjt:  KRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISD

Query:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        RDKIF+SNFWKELF  M TILKRST FHPQT+GQ ERVNQCLETYLR FCNEQP++W
Subjt:  RDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

5.1e-60

31.46

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-
        +LQW QPK+   LR FL    Y R+F+ +  ++  P+  LL+K+  +KW    T A EN+K  + +  VL   ++S   ++ETDAS   +GAVLSQ  + 
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-

Query:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL
            P+ ++S K+S      S+  +E++A++ S++ WR YL      F I+   + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL
Subjt:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL

Query:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH
        SR            +D ++      +        V  E     +L  ++    +   +E   + ++G L+  KD+++L N + L  +++  +H+     H
Subjt:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH

Query:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK
         G       +     W G++  I+ YV+ C  CQ  K    KP G LQPIP  +R  E  +MDFI  LP++ G N + VVVDR SK A  +      +A+
Subjt:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK

Query:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        Q A  F  +++   G PK II+D D IF S  WK+       ++K S  + PQT+GQ ER NQ +E  LR  C+  P+ W
Subjt:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

P0CT35 Transposon Tf2-2 polyprotein

5.1e-60

31.46

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-
        +LQW QPK+   LR FL    Y R+F+ +  ++  P+  LL+K+  +KW    T A EN+K  + +  VL   ++S   ++ETDAS   +GAVLSQ  + 
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-

Query:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL
            P+ ++S K+S      S+  +E++A++ S++ WR YL      F I+   + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL
Subjt:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL

Query:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH
        SR            +D ++      +        V  E     +L  ++    +   +E   + ++G L+  KD+++L N + L  +++  +H+     H
Subjt:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH

Query:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK
         G       +     W G++  I+ YV+ C  CQ  K    KP G LQPIP  +R  E  +MDFI  LP++ G N + VVVDR SK A  +      +A+
Subjt:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK

Query:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        Q A  F  +++   G PK II+D D IF S  WK+       ++K S  + PQT+GQ ER NQ +E  LR  C+  P+ W
Subjt:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

P0CT36 Transposon Tf2-3 polyprotein

5.1e-60

31.46

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-
        +LQW QPK+   LR FL    Y R+F+ +  ++  P+  LL+K+  +KW    T A EN+K  + +  VL   ++S   ++ETDAS   +GAVLSQ  + 
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-

Query:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL
            P+ ++S K+S      S+  +E++A++ S++ WR YL      F I+   + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL
Subjt:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL

Query:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH
        SR            +D ++      +        V  E     +L  ++    +   +E   + ++G L+  KD+++L N + L  +++  +H+     H
Subjt:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH

Query:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK
         G       +     W G++  I+ YV+ C  CQ  K    KP G LQPIP  +R  E  +MDFI  LP++ G N + VVVDR SK A  +      +A+
Subjt:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK

Query:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        Q A  F  +++   G PK II+D D IF S  WK+       ++K S  + PQT+GQ ER NQ +E  LR  C+  P+ W
Subjt:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

P0CT41 Transposon Tf2-12 polyprotein

5.1e-60

31.46

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-
        +LQW QPK+   LR FL    Y R+F+ +  ++  P+  LL+K+  +KW    T A EN+K  + +  VL   ++S   ++ETDAS   +GAVLSQ  + 
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-

Query:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL
            P+ ++S K+S      S+  +E++A++ S++ WR YL      F I+   + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL
Subjt:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL

Query:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH
        SR            +D ++      +        V  E     +L  ++    +   +E   + ++G L+  KD+++L N + L  +++  +H+     H
Subjt:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH

Query:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK
         G       +     W G++  I+ YV+ C  CQ  K    KP G LQPIP  +R  E  +MDFI  LP++ G N + VVVDR SK A  +      +A+
Subjt:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK

Query:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        Q A  F  +++   G PK II+D D IF S  WK+       ++K S  + PQT+GQ ER NQ +E  LR  C+  P+ W
Subjt:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

Q9UR07 Transposon Tf2-11 polyprotein

5.1e-60

31.46

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-
        +LQW QPK+   LR FL    Y R+F+ +  ++  P+  LL+K+  +KW    T A EN+K  + +  VL   ++S   ++ETDAS   +GAVLSQ  + 
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKN-SFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGN-

Query:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL
            P+ ++S K+S      S+  +E++A++ S++ WR YL      F I+   + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL
Subjt:  ----PIAFFSQKLSPRAQTKSIYKRELMAVVLSVQKWRRYLLG--RRFTIMLYQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDAL

Query:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH
        SR            +D ++      +        V  E     +L  ++    +   +E   + ++G L+  KD+++L N + L  +++  +H+     H
Subjt:  SR------------KDTTLELQTMTTTGIVDMETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLL-YKDRVVLSNSSSLIPSLLHTFHDSILGGH

Query:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK
         G       +     W G++  I+ YV+ C  CQ  K    KP G LQPIP  +R  E  +MDFI  LP++ G N + VVVDR SK A  +      +A+
Subjt:  SGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQ-TKYEATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAK

Query:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW
        Q A  F  +++   G PK II+D D IF S  WK+       ++K S  + PQT+GQ ER NQ +E  LR  C+  P+ W
Subjt:  QVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTILKRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQW

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

3.3e-22

62.03

Show/hide

Query:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFI
        M+ WP+PK+ T LRGFL L GYYRRFVK YG+I+ P+T+LL+KNS KW   A LAF+ LK A+TT+ VLALP+  LPF+
Subjt:  MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGCAATGGCCCCAACCTAAAGACATAACTGGGTTAAGGGGGTTCTTAAGGCTGAAGGGTTATTATAGGCGATTTGTCAAGAGGTATGGTGAAATCATGGCT
CCCGTAACCAAACTACTGCAAAAGAATTCGTTTAAATGGGATGGAGAAGCCACTCTCGCCTTTGAAAACCTCAAGCTAGCCATGACCACAATCCTCGTGCTAGCC
CTACCAAATTGGTCTCTACCTTTTATTGTGGAAACGGATGCCTCGGGCAGTGGTTTGGGAGCAGTACTCTCTCAAAATGGCAATCCTATAGCCTTCTTTAGTCAA
AAACTATCCCCAAGGGCTCAAACTAAATCAATCTACAAAAGAGAACTGATGGCTGTAGTTCTTTCAGTACAAAAATGGAGACGTTATCTGTTGGGAAGGAGGTTC
ACGATTATGTTGTATCAGAAGGCCTTGAAATTCTTATTGGAACAAAGGGAGGTTCAACCTCAGTTTCAAAAGTGGCTAACCAAACTTTTGGGTTATGACTTTGAG
ATATTATATCAGCCAGGACTCCAAAATAAGACTGTCGATGCACTTTCAAGAAAGGACACTACCCTCGAGTTGCAAACTATGACCACGACAGGAATTGTAGACATG
GAAACCGTGGCAAAGGAAGTAGAAAAAGTTGCAGAGCTCCATAAAATTGTGGAACAACTACAGAGGAACCCTCCAATCGAAGGAAAGTATAAATGGGAAAATGGT
AGACTGCTATATAAAGACCGAGTAGTACTATCGAATTCATCATCTCTCATCCCTAGCCTGTTGCACACGTTCCATGACTCCATTTTAGGAGGTCATTCAGGGTTT
TTAAGAACCTACAAATGGATGAGCGGGGAGTTACATTGGATGGGAATGAAGGCTGACATTAAACGTTATGTAGAGCAATGTGAGATTTGCCAAACTAAGTATGAA
GCCACTAAGCCAGCTGGAGTTCTTCAGCCTATTCCTATCCCAGATAGGGTTTTAGAAGATTGGACTATGGATTTTATAGAAGGGCTGCCTAAAGCTGGAGGAGTG
AATGTGATCATGGTAGTAGTGGATCGACTAAGCAAATATGCTTATTTCATCACTTTGAAACACCCATTTTCAGCAAAGCAAGTAGCAGCTGAGTTCATCGACAAG
ATAGTGAGAAGACACGGTATCCCTAAATCTATCATCTCTGATAGAGACAAGATCTTTCTTAGCAACTTCTGGAAAGAGTTATTTGCCACTATGAGAACCATACTA
AAGAGGAGCACGACATTCCACCCACAAACAAACGGACAGAGAGAGAGGGTTAATCAATGCTTAGAAACTTACTTAAGGTTCTTTTGTAATGAACAGCCAAGTCAA
TGGGATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLQWPQPKDITGLRGFLRLKGYYRRFVKRYGEIMAPVTKLLQKNSFKWDGEATLAFENLKLAMTTILVLALPNWSLPFIVETDASGSGLGAVLSQNGNPIAFFSQ
KLSPRAQTKSIYKRELMAVVLSVQKWRRYLLGRRFTIMLYQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKTVDALSRKDTTLELQTMTTTGIVDM
ETVAKEVEKVAELHKIVEQLQRNPPIEGKYKWENGRLLYKDRVVLSNSSSLIPSLLHTFHDSILGGHSGFLRTYKWMSGELHWMGMKADIKRYVEQCEICQTKYE
ATKPAGVLQPIPIPDRVLEDWTMDFIEGLPKAGGVNVIMVVVDRLSKYAYFITLKHPFSAKQVAAEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFATMRTIL
KRSTTFHPQTNGQRERVNQCLETYLRFFCNEQPSQWD

Cmc06g0163901 (gene) of Melon (Charmono) v1.1 genome