; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0164061 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0164061
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr06:14254398..14255267
RNA-Seq ExpressionCmc06g0164061
SyntenyCmc06g0164061
Gene Ontology termsGO:0006116 - NADH oxidation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005777 - peroxisome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003954 - NADH dehydrogenase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]1.4e-14588.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]1.4e-14588.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]1.4e-14588.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]1.4e-14588.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]1.4e-14588.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase6.7e-14688.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

A0A5A7V0Y9 Beta-galactosidase6.7e-14688.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

A0A5A7VLQ7 Beta-galactosidase6.7e-14688.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

A0A5D3BJK7 Beta-galactosidase6.7e-14688.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

A0A5D3C4T4 Beta-galactosidase6.7e-14688.93Show/hide
Query:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL
        MSSGRTI  A HSRGLYILDDDTSCSSLSRVSLLS+YF+T EQDCMLWHFRL HPNFTY+Q+LFPHLFSK+DVSSL CDVCIRAK H+VSFPSQPYKPT 
Subjt:  MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL

Query:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP
        PF LIHSDVW PSKVTTSSGK WFVT IDDHTRLTWVYLI+DKSEV SIFQNFYHT++TQFHTKIAILRSDN REFQNHNLSEFLASKGIVHQTSCAYTP
Subjt:  PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTP

Query:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN
        Q+NGVAERKNRHLVEV RSLMLSTSLPSYLW DAILTA HLINRM SRILHLQT L+CLKESYPSTRLVSEVPLRVFGCTAYV NFG N
Subjt:  QKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.7e-2732.66Show/hide
Query:  LWHFRLNHPNFTYV-------QYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL--PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWV
        LWH R  H +   +        +    L + L++S   C+ C+  K  ++ F     K  +  P  ++HSDV  P    T   K +FV  +D  T     
Subjt:  LWHFRLNHPNFTYV-------QYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTL--PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWV

Query:  YLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILT
        YLI  KS+V S+FQ+F    E  F+ K+  L  DN RE+ ++ + +F   KGI +  +  +TPQ NGV+ER  R + E  R+++    L    W +A+LT
Subjt:  YLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILT

Query:  ADHLINRMSSRIL--HLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYV
        A +LINR+ SR L    +T         P  +      LRVFG T YV
Subjt:  ADHLINRMSSRIL--HLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-3436.97Show/hide
Query:  LWHFRLNHPNFTYVQYLF-PHLFSKLDVSSLF-CDVCIRAKHHQVSFPSQPYKPTLPFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKS
        LWH R+ H +   +Q L    L S    +++  CD C+  K H+VSF +   +      L++SDV  P ++ +  G  +FVT IDD +R  WVY++  K 
Subjt:  LWHFRLNHPNFTYVQYLF-PHLFSKLDVSSLF-CDVCIRAKHHQVSFPSQPYKPTLPFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKS

Query:  EVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINR
        +V  +FQ F+  VE +   K+  LRSDN  E+ +    E+ +S GI H+ +   TPQ NGVAER NR +VE  RS++    LP   W +A+ TA +LINR
Subjt:  EVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINR

Query:  MSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAY
          S  L  +     + E   + + VS   L+VFGC A+
Subjt:  MSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAY

Q12491 Transposon Ty2-B Gag-Pol polyprotein1.3e-1627.94Show/hide
Query:  LWHFRLNHPNFTYVQ---------YLFPHLFSKLDVSSLFCDVCI---RAKHHQVSFPSQPYKPTL-PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTR
        L H  L H NF  +Q         YL        + S+  C  C+     KH  V      Y+ +  PF  +H+D++ P      S   +F++  D+ TR
Subjt:  LWHFRLNHPNFTYVQ---------YLFPHLFSKLDVSSLFCDVCI---RAKHHQVSFPSQPYKPTL-PFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTR

Query:  LTWVYLITDKSEVS--SIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLW
          WVY + D+ E S  ++F +    ++ QF+ ++ +++ D   E+ N  L +F  ++GI    +     + +GVAER NR L+   R+L+  + LP++LW
Subjt:  LTWVYLITDKSEVS--SIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLW

Query:  RDAI
          A+
Subjt:  RDAI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.3e-3135.29Show/hide
Query:  WHFRLNHPNFTYVQYLFP-HLFSKLDVSSLF--CDVCIRAKHHQVSFPSQPYKPTLPFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKS
        WH RL HP  + +  +   +  S L+ S  F  C  C+  K ++V F       T P   I+SDVW  S + +     ++V  +D  TR TW+Y +  KS
Subjt:  WHFRLNHPNFTYVQYLFP-HLFSKLDVSSLF--CDVCIRAKHHQVSFPSQPYKPTLPFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKS

Query:  EVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINR
        +V   F  F + +E +F T+I    SDN  EF    L E+ +  GI H TS  +TP+ NG++ERK+RH+VE G +L+   S+P   W  A   A +LINR
Subjt:  EVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINR

Query:  MSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAY
        + + +L L++    L  + P+        LRVFGC  Y
Subjt:  MSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.2e-3236.13Show/hide
Query:  WHFRLNHPNFTYVQYLFP-HLFSKLDVSS--LFCDVCIRAKHHQVSFPSQPYKPTLPFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKS
        WH RL HP+   +  +   H    L+ S   L C  C   K H+V F +     + P   I+SDVW  S + +     ++V  +D  TR TW+Y +  KS
Subjt:  WHFRLNHPNFTYVQYLFP-HLFSKLDVSS--LFCDVCIRAKHHQVSFPSQPYKPTLPFTLIHSDVWDPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKS

Query:  EVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINR
        +V   F  F   VE +F T+I  L SDN  EF    L ++L+  GI H TS  +TP+ NG++ERK+RH+VE+G +L+   S+P   W  A   A +LINR
Subjt:  EVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSLMLSTSLPSYLWRDAILTADHLINR

Query:  MSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAY
        + + +L LQ+    L    P+        L+VFGC  Y
Subjt:  MSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCGGGGAGGACGATTTGCCCTGCCTGGCATAGCAGGGGACTTTACATCCTTGATGATGATACCTCCTGTAGTAGTTTGTCTAGGGTTAGTTTACTGTCGACCTA
CTTTAACACTTTTGAACAAGATTGTATGTTGTGGCATTTTCGACTAAACCACCCAAATTTTACCTATGTGCAATATTTATTTCCCCACCTTTTTTCTAAACTTGATGTCT
CTTCTCTGTTTTGTGATGTGTGTATCCGGGCTAAACACCATCAGGTCTCTTTTCCCTCACAACCATATAAACCTACATTACCGTTTACCCTCATCCATAGTGACGTTTGG
GATCCTTCCAAGGTCACCACCTCATCGGGAAAGTGGTGGTTTGTAACTTCCATTGATGACCATACCCGTCTTACCTGGGTCTACCTTATCACAGATAAATCCGAGGTTTC
ATCCATTTTCCAAAACTTCTATCATACTGTTGAAACACAATTCCATACAAAAATTGCGATTCTTCGAAGTGATAATAATCGGGAATTCCAAAACCATAACCTTAGTGAAT
TTTTAGCCTCCAAGGGGATTGTTCACCAAACCTCGTGTGCCTACACTCCTCAAAAAAATGGAGTGGCCGAACGAAAAAACCGTCACCTTGTGGAAGTAGGTCGTTCCCTT
ATGCTTTCTACTTCCCTTCCATCATACCTGTGGAGAGATGCTATTCTTACAGCCGATCACTTAATCAATAGAATGTCTTCTCGTATCCTCCACCTTCAAACTACTTTAAA
TTGTCTAAAGGAGTCTTACCCCTCTACTCGCCTTGTTTCTGAGGTTCCTCTTCGTGTGTTTGGGTGTACCGCTTATGTCCAAAATTTTGGCTCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCGGGGAGGACGATTTGCCCTGCCTGGCATAGCAGGGGACTTTACATCCTTGATGATGATACCTCCTGTAGTAGTTTGTCTAGGGTTAGTTTACTGTCGACCTA
CTTTAACACTTTTGAACAAGATTGTATGTTGTGGCATTTTCGACTAAACCACCCAAATTTTACCTATGTGCAATATTTATTTCCCCACCTTTTTTCTAAACTTGATGTCT
CTTCTCTGTTTTGTGATGTGTGTATCCGGGCTAAACACCATCAGGTCTCTTTTCCCTCACAACCATATAAACCTACATTACCGTTTACCCTCATCCATAGTGACGTTTGG
GATCCTTCCAAGGTCACCACCTCATCGGGAAAGTGGTGGTTTGTAACTTCCATTGATGACCATACCCGTCTTACCTGGGTCTACCTTATCACAGATAAATCCGAGGTTTC
ATCCATTTTCCAAAACTTCTATCATACTGTTGAAACACAATTCCATACAAAAATTGCGATTCTTCGAAGTGATAATAATCGGGAATTCCAAAACCATAACCTTAGTGAAT
TTTTAGCCTCCAAGGGGATTGTTCACCAAACCTCGTGTGCCTACACTCCTCAAAAAAATGGAGTGGCCGAACGAAAAAACCGTCACCTTGTGGAAGTAGGTCGTTCCCTT
ATGCTTTCTACTTCCCTTCCATCATACCTGTGGAGAGATGCTATTCTTACAGCCGATCACTTAATCAATAGAATGTCTTCTCGTATCCTCCACCTTCAAACTACTTTAAA
TTGTCTAAAGGAGTCTTACCCCTCTACTCGCCTTGTTTCTGAGGTTCCTCTTCGTGTGTTTGGGTGTACCGCTTATGTCCAAAATTTTGGCTCTAATTAG
Protein sequenceShow/hide protein sequence
MSSGRTICPAWHSRGLYILDDDTSCSSLSRVSLLSTYFNTFEQDCMLWHFRLNHPNFTYVQYLFPHLFSKLDVSSLFCDVCIRAKHHQVSFPSQPYKPTLPFTLIHSDVW
DPSKVTTSSGKWWFVTSIDDHTRLTWVYLITDKSEVSSIFQNFYHTVETQFHTKIAILRSDNNREFQNHNLSEFLASKGIVHQTSCAYTPQKNGVAERKNRHLVEVGRSL
MLSTSLPSYLWRDAILTADHLINRMSSRILHLQTTLNCLKESYPSTRLVSEVPLRVFGCTAYVQNFGSN