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Cmc06g0164121 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0164121
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionzinc finger BED domain-containing protein RICESLEEPER 2-like
Genome locationCMiso1.1chr06:14369487..14370074
RNA-Seq ExpressionCmc06g0164121
SyntenyCmc06g0164121
Gene Ontology termsGO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACX85638.1 putative transposase [Cucumis melo]1.3e-6288.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

KAA0026183.1 putative transposase [Cucumis melo var. makuwa]1.3e-6288.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

TYK06161.1 putative transposase [Cucumis melo var. makuwa]1.3e-6288.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

TYK24202.1 putative transposase [Cucumis melo var. makuwa]1.3e-6288.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

TYK30776.1 putative transposase [Cucumis melo var. makuwa]1.3e-6288.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

TrEMBL top hitse value%identityAlignment
A0A5A7SNJ1 Putative transposase6.3e-6388.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

A0A5A7U1Q3 Putative transposase6.3e-6388.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

A0A5D3C2L4 Putative transposase6.3e-6388.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

A0A5D3D570 Putative transposase6.3e-6388.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

A0A5D3E590 Putative transposase6.3e-6388.49Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        MVITAHFIDDDWNLHKRIL+F QVANHKGDTIGR IEKCLEGW IDRLFTVTVDN SSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSD+L
Subjt:  MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK
        KDLHVSII+IRNAVKYVRSSPARLQIFK   K+ +   K
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQK

SwissProt top hitse value%identityAlignment
B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 15.4e-1935.77Show/hide
Query:  ITAHFIDDDWNLHKRILSFFQVAN-HKGDTIGRVIEKCLEGWDI-DRLFTVTVDN-TSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDS
        +   FID +W +H+R+L+F  V++ H  + +   I   L  W++ D+LFT+T+DN  SS+D+  A L      +N L+L G+   +RC AHILN +  D 
Subjt:  ITAHFIDDDWNLHKRILSFFQVAN-HKGDTIGRVIEKCLEGWDI-DRLFTVTVDN-TSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDS

Query:  LKDLHVSIIQIRNAVKYVRSSPA
        +  +H  I  IR ++K++++SP+
Subjt:  LKDLHVSIIQIRNAVKYVRSSPA

P03010 Putative AC9 transposase1.1e-1939.52Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQV-ANHKGDTIGRVIEKCLEGWDID-RLFTVTVDNTSSNDVAIAYLVKKFKGR-NGLVLDGEFIHIRCCAHILNLIVS
        M +T H+IDDDW L KRI+ FF V   H G  + +     +  W+I+ +LF +++DN S+N+VA+  +++  +   + LV DG F H+RC  HILNL+  
Subjt:  MVITAHFIDDDWNLHKRILSFFQV-ANHKGDTIGRVIEKCLEGWDID-RLFTVTVDNTSSNDVAIAYLVKKFKGR-NGLVLDGEFIHIRCCAHILNLIVS

Query:  DSLKDLHVSIIQIRNAVKYVRSSP
        D L  +  +I +I+  V  V+SSP
Subjt:  DSLKDLHVSIIQIRNAVKYVRSSP

P08770 Putative AC transposase1.1e-1939.52Show/hide
Query:  MVITAHFIDDDWNLHKRILSFFQV-ANHKGDTIGRVIEKCLEGWDID-RLFTVTVDNTSSNDVAIAYLVKKFKGR-NGLVLDGEFIHIRCCAHILNLIVS
        M +T H+IDDDW L KRI+ FF V   H G  + +     +  W+I+ +LF +++DN S+N+VA+  +++  +   + LV DG F H+RC  HILNL+  
Subjt:  MVITAHFIDDDWNLHKRILSFFQV-ANHKGDTIGRVIEKCLEGWDID-RLFTVTVDNTSSNDVAIAYLVKKFKGR-NGLVLDGEFIHIRCCAHILNLIVS

Query:  DSLKDLHVSIIQIRNAVKYVRSSP
        D L  +  +I +I+  V  V+SSP
Subjt:  DSLKDLHVSIIQIRNAVKYVRSSP

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 21.4e-1935.94Show/hide
Query:  ITAHFIDDDWNLHKRILSFFQVAN-HKGDTIGRVIEKCLEGWDI-DRLFTVTVDN-TSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDS
        +   FID +W +H+R+L+F  V++ H  + +   I   L  W++ D+LFT+T+DN  SS+D+  A L      +N L+L G+   +RC AHILN +  D 
Subjt:  ITAHFIDDDWNLHKRILSFFQVAN-HKGDTIGRVIEKCLEGWDI-DRLFTVTVDN-TSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDS

Query:  LKDLHVSIIQIRNAVKYVRSSPARLQIF
        +  +H  I  IR ++K++++SP+R + F
Subjt:  LKDLHVSIIQIRNAVKYVRSSPARLQIF

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 34.3e-1631.97Show/hide
Query:  ITAHFIDDDWNLHKRILSFFQVAN-HKGDTIGRVIEKCLEGWDI-DRLFTVTVDN-TSSNDVAIAYLVKKFKG-RNGLVLDGEFIHIRCCAHILNLIVSD
        + A FID +W +H+R+++F  V++ H  +++   I   L  W++ D+LFT+T+DN  SS+D+  A ++      ++ +++ G+   +RC AHILN +  D
Subjt:  ITAHFIDDDWNLHKRILSFFQVAN-HKGDTIGRVIEKCLEGWDI-DRLFTVTVDN-TSSNDVAIAYLVKKFKG-RNGLVLDGEFIHIRCCAHILNLIVSD

Query:  SLKDLHVSIIQIRNAVKYVRSS
         +  +H  I  IR ++K++++S
Subjt:  SLKDLHVSIIQIRNAVKYVRSS

Arabidopsis top hitse value%identityAlignment
AT3G42170.1 BED zinc finger ;hAT family dimerisation domain7.2e-1127.46Show/hide
Query:  ITAHFIDDDWNLHKRILSFFQVANHKGD-TIGRVIEKCLEGWDID-RLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL
        ITAH+ID DW + K++L+    +  + D  +   +  C+  W ++ +LF VT ++ +SN  A+  +  +   +N  +LDG+ +   C A     +  D L
Subjt:  ITAHFIDDDWNLHKRILSFFQVANHKGD-TIGRVIEKCLEGWDID-RLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSL

Query:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQKIVL
        +     I  IR++VK+V++S +  + F  L ++++   + VL
Subjt:  KDLHVSIIQIRNAVKYVRSSPARLQIFKFLLKKIRCQQKIVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATAACGGCTCATTTCATTGATGATGATTGGAACTTGCACAAAAGAATTTTGAGCTTTTTTCAAGTAGCTAATCATAAAGGAGATACCATAGGTAGAGTCATTGA
AAAGTGCTTAGAAGGCTGGGATATTGATAGGCTCTTTACTGTAACGGTTGATAATACGAGTTCAAATGATGTAGCTATTGCCTACTTGGTTAAAAAGTTTAAAGGCAGAA
ATGGGTTGGTGTTGGATGGTGAATTTATTCACATTAGATGTTGTGCCCATATTCTTAATTTAATTGTTAGTGATTCATTAAAAGATTTGCATGTGTCTATCATTCAAATC
AGAAATGCTGTGAAGTATGTTAGGTCATCTCCTGCTAGATTGCAAATATTTAAATTTTTGCTAAAAAAGATAAGATGTCAACAAAAAATTGTCTTACAATGGATGTTCCG
ACACGATGGAATTCTACTTTTACTATGTTGGATGGAGCAATTAAGTGTCAAAAGACTTTTGAAAGATTGGAGGAGCATGACCCTAGTTATTTGCCAAAGGATGATATTCC
TACTACTGAAGATTGGGATAATGCAAAAGTGTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATAACGGCTCATTTCATTGATGATGATTGGAACTTGCACAAAAGAATTTTGAGCTTTTTTCAAGTAGCTAATCATAAAGGAGATACCATAGGTAGAGTCATTGA
AAAGTGCTTAGAAGGCTGGGATATTGATAGGCTCTTTACTGTAACGGTTGATAATACGAGTTCAAATGATGTAGCTATTGCCTACTTGGTTAAAAAGTTTAAAGGCAGAA
ATGGGTTGGTGTTGGATGGTGAATTTATTCACATTAGATGTTGTGCCCATATTCTTAATTTAATTGTTAGTGATTCATTAAAAGATTTGCATGTGTCTATCATTCAAATC
AGAAATGCTGTGAAGTATGTTAGGTCATCTCCTGCTAGATTGCAAATATTTAAATTTTTGCTAAAAAAGATAAGATGTCAACAAAAAATTGTCTTACAATGGATGTTCCG
ACACGATGGAATTCTACTTTTACTATGTTGGATGGAGCAATTAAGTGTCAAAAGACTTTTGAAAGATTGGAGGAGCATGACCCTAGTTATTTGCCAAAGGATGATATTCC
TACTACTGAAGATTGGGATAATGCAAAAGTGTTTGTAA
Protein sequenceShow/hide protein sequence
MVITAHFIDDDWNLHKRILSFFQVANHKGDTIGRVIEKCLEGWDIDRLFTVTVDNTSSNDVAIAYLVKKFKGRNGLVLDGEFIHIRCCAHILNLIVSDSLKDLHVSIIQI
RNAVKYVRSSPARLQIFKFLLKKIRCQQKIVLQWMFRHDGILLLLCWMEQLSVKRLLKDWRSMTLVICQRMIFLLLKIGIMQKCL