; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0164391 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0164391
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr06:14867195..14868103
RNA-Seq ExpressionCmc06g0164391
SyntenyCmc06g0164391
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]5.2e-14386.38Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EEMTAFRTPK IY YKVIPFGLKN G TYQRAMQKVFDDMLHKYV CYVDD VVKS+RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKMPRPKSLHDLRSLQG+LAYIRRFISN+A +CQPF+ LMRKGENF+ DEACQN FDSIKKYLLN PVL AP+P +PLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQE+EKGKE ALYYLSRTLV A+VNYS IEKMCLALFFAI+KLRHYMQ FTVHLV K DPIKYVLSR IISG LAKWAV+LQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  I
        I
Subjt:  I

TYK00337.1 uncharacterized protein E5676_scaffold1923G00150 [Cucumis melo var. makuwa]2.7e-152100Show/hide
Query:  MTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYR
        MTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYR
Subjt:  MTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYR

Query:  GIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQERS
        GIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQERS
Subjt:  GIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQERS

Query:  LGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLS
        LGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLS
Subjt:  LGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLS

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]8.8e-14386.09Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EEMTAFRTPK IY YKV+PFGLKNVG TYQRAMQKVFDDMLH+YV CYVDD VVK++RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKM RPKSLHDLRSLQG+LAYIRRFISN+A +CQPF+ LMRKGENF+ DEACQN FDSIKKYLL  PVL APVP KPLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQEE KGKE +LYYLSRTL+ A+VNYS IEKMCLALFFAI+KLRHYMQ FTVHLV KADPIKYVLSR IISGRLAKWAVLLQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  IP
        IP
Subjt:  IP

XP_031737039.1 uncharacterized protein LOC116402129 [Cucumis sativus]2.0e-14285.76Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EEMTAFRTPK IY YKV+PFGLKNVG TYQRAMQKVFDDMLH+YV CYVDD VVK++RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKM RPKSLHDLRSLQG+LAYIRRFISN+A +CQPF+ LMRKGENF+ DEACQN FDSIKKYLL  PVL APVP KPLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQEE KGKE +LYYLSRTL+ A+VNYS IEKMCLALFFAI+KLRHYMQ FTVHLV KADPIKYVLSR II+GRLAKWAVLLQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  IP
        IP
Subjt:  IP

XP_031742888.1 uncharacterized protein LOC116404510 [Cucumis sativus]2.6e-14285.76Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EEMTAFRTPK IY YKV+PFGLKN G TYQRAMQKVFDDMLH+YV CYVDD VVK++RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKM RPKSLHDLRSLQG+LAYIRRFISN+A +CQPF+ LMRKGENF+ DEACQN FDSIKKYLL  PVL APVP KPLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQEE KGKE +LYYLSRTL+ A+VNYS IEKMCLALFFAI+KLRHYMQ FTVHLV KADPIKYVLSR IISGRLAKWAVLLQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  IP
        IP
Subjt:  IP

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H2.5e-14386.38Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EEMTAFRTPK IY YKVIPFGLKN G TYQRAMQKVFDDMLHKYV CYVDD VVKS+RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKMPRPKSLHDLRSLQG+LAYIRRFISN+A +CQPF+ LMRKGENF+ DEACQN FDSIKKYLLN PVL AP+P +PLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQE+EKGKE ALYYLSRTLV A+VNYS IEKMCLALFFAI+KLRHYMQ FTVHLV K DPIKYVLSR IISG LAKWAV+LQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  I
        I
Subjt:  I

A0A5A7U8J5 Ribonuclease H6.2e-14285.38Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EEMTAFRTPK IY YKV+PFGLKNVG TYQRAMQKVFDDMLHKYV CYVDD VVKS+RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKMPRPKSLHDLRSLQG+LAYIRRFISN+A +CQPF+ LMRKGENF+ +EACQN FDSIKKYLLN  VL APVP +PLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQE EKGKE ALYYLSRTLV  +VNYS IEKMC ALFFAI+KLRHYMQ FTVHLV KADPIKY+LSR+IISGRLAKWA++LQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  I
        I
Subjt:  I

A0A5A7VKY8 Uncharacterized protein8.1e-14285.38Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EE+TAFRTPK IY YKV+PFGLKN G TYQRAMQKVFDDMLHKYV CY DD VVKS+RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKMPRPKSLHDLRSLQG+LAYI+RFISN+A +CQPF+ LMRKGE F+ DEACQN FDSIKKYLLN PVL APVPS+PLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQE EKGKE ALYYLSRTLV A+VNYS IEKMCLALFFAI KLRHYMQ FTVHLV KADPIKYVLSR IISGRLAKW ++LQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  I
        I
Subjt:  I

A0A5D3BMC3 Uncharacterized protein1.3e-152100Show/hide
Query:  MTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYR
        MTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYR
Subjt:  MTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYR

Query:  GIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQERS
        GIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQERS
Subjt:  GIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQERS

Query:  LGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLS
        LGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLS
Subjt:  LGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLS

A0A5D3DZI7 Uncharacterized protein6.2e-14285.38Show/hide
Query:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL
        MALS EE+TAFRTPK IY YKV+PFGLKN G TYQRAMQKVFDDMLHKYV CY DD VVKS+RRQDHLKDLK+VFD LRKYQLRMNPLKCAF VTSGKFL
Subjt:  MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFL

Query:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY
        GFIVR+RGI+IDQSKIDAIQKMPRPKSLHDLRSLQG+LAYI+RFISN+A +CQPF+ LMRKGE F+ DEACQN FDSIKKYLLN PVL APVPS+PLILY
Subjt:  GFIVRYRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILY

Query:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY
        I AQERSLGA LAQE EKGKE ALYYLSRTLV A+VNYS IEKMCLALFFAI+KLRHYMQ FTVHLV KADPIKYVLSR IISGRLAKW ++LQQYDIVY
Subjt:  ITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVY

Query:  I
        I
Subjt:  I

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.0e-3833.9Show/hide
Query:  TAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYRG
        TAF T    Y Y  +PFGLKN   T+QR M  +   +L+K+   Y+DD +V S    +HL+ L +VF+ L K  L++   KC F      FLG ++   G
Subjt:  TAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYRG

Query:  IDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIK--KYLLNQ-PVLKAPVPSKPLILYITAQE
        I  +  KI+AIQK P P    ++++  G   Y R+FI N A   +P    ++K  N   D     +  + K  KYL+++ P+LK P  +K   L   A +
Subjt:  IDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIK--KYLLNQ-PVLKAPVPSKPLILYITAQE

Query:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYD
         +LGA L+Q+        L Y+SRTL E ++NYS IEK  LA+ +A    RHY+      + +   P+ ++      + +L +W V L ++D
Subjt:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYD

P0CT34 Transposon Tf2-1 polyprotein2.0e-3326.73Show/hide
Query:  EEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVR
        E   AFR P+ ++ Y V+P+G+      +Q  +  +  +    +V CY+DD ++ S+   +H+K +K V   L+   L +N  KC F  +  KF+G+ + 
Subjt:  EEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVR

Query:  YRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQE
         +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K   +          ++IK+ L++ PVL+    SK ++L   A +
Subjt:  YRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQE

Query:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISG-----------RLAKWAVLLQ
         ++GA L+Q+ +  K   + Y S  + +A++NYS+ +K  LA+  ++   RHY++       +  +P K +     + G           RLA+W + LQ
Subjt:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISG-----------RLAKWAVLLQ

Query:  QYD
         ++
Subjt:  QYD

P0CT35 Transposon Tf2-2 polyprotein2.0e-3326.73Show/hide
Query:  EEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVR
        E   AFR P+ ++ Y V+P+G+      +Q  +  +  +    +V CY+DD ++ S+   +H+K +K V   L+   L +N  KC F  +  KF+G+ + 
Subjt:  EEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVR

Query:  YRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQE
         +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K   +          ++IK+ L++ PVL+    SK ++L   A +
Subjt:  YRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQE

Query:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISG-----------RLAKWAVLLQ
         ++GA L+Q+ +  K   + Y S  + +A++NYS+ +K  LA+  ++   RHY++       +  +P K +     + G           RLA+W + LQ
Subjt:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISG-----------RLAKWAVLLQ

Query:  QYD
         ++
Subjt:  QYD

P0CT41 Transposon Tf2-12 polyprotein2.0e-3326.73Show/hide
Query:  EEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVR
        E   AFR P+ ++ Y V+P+G+      +Q  +  +  +    +V CY+DD ++ S+   +H+K +K V   L+   L +N  KC F  +  KF+G+ + 
Subjt:  EEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVR

Query:  YRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQE
         +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K   +          ++IK+ L++ PVL+    SK ++L   A +
Subjt:  YRGIDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQE

Query:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISG-----------RLAKWAVLLQ
         ++GA L+Q+ +  K   + Y S  + +A++NYS+ +K  LA+  ++   RHY++       +  +P K +     + G           RLA+W + LQ
Subjt:  RSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISG-----------RLAKWAVLLQ

Query:  QYD
         ++
Subjt:  QYD

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-3630.84Show/hide
Query:  TAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYRG
        TAF T    Y +  +PFGLKN    +QR +  +  + + K    Y+DD +V SE    H K+L++V   L K  L++N  K  F  T  +FLG+IV   G
Subjt:  TAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYRG

Query:  IDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMR-----------KGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPL
        I  D  K+ AI +MP P S+ +L+   G  +Y R+FI + A   +P   L R                  DE     F+ +K  L +  +L  P  +KP 
Subjt:  IDIDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMR-----------KGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPL

Query:  ILYITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQ-TFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQY
         L   A   ++GA L+Q+++ G++  + Y+SR+L + + NY+ IEK  LA+ ++++ LR Y+    T+ + T   P+ + L     + +L +W   +++Y
Subjt:  ILYITAQERSLGAFLAQEEEKGKECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQ-TFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQY

Query:  --DIVYIP
          +++Y P
Subjt:  --DIVYIP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTTTCATATGAAGAAATGACAGCTTTCAGGACTCCAAAGAAAATATATTATTACAAGGTGATACCCTTTGGATTGAAAAATGTTGGTGTCACTTATCAACGTGC
TATGCAAAAAGTGTTTGACGATATGCTACATAAGTATGTTGGGTGTTATGTTGATGACTTTGTGGTTAAATCTGAGAGACGACAAGACCATTTGAAGGATCTAAAAATTG
TGTTCGACTGCTTGCGAAAATATCAGCTAAGGATGAACCCTCTCAAATGCGCGTTCGATGTGACTTCAGGAAAGTTTCTTGGCTTCATTGTAAGGTACCGAGGGATTGAT
ATAGACCAGTCCAAGATTGATGCCATTCAGAAGATGCCAAGGCCAAAGAGTTTACATGACCTAAGAAGTCTTCAGGGACAATTGGCTTACATTCGAAGGTTCATCTCCAA
CATGGCCAGTCAGTGCCAACCTTTTAAAACGTTGATGAGAAAAGGAGAAAATTTTATGTGCGATGAGGCTTGTCAGAATTTTTTTGATAGCATAAAGAAATACTTGCTTA
ATCAACCAGTATTAAAAGCTCCAGTACCTAGCAAGCCATTAATATTGTACATTACTGCACAAGAAAGGTCTCTAGGCGCATTCTTGGCGCAAGAAGAGGAGAAGGGAAAG
GAATGTGCTCTCTACTATCTAAGCAGAACCTTAGTTGAGGCCAAAGTTAACTATTCTCTCATTGAGAAAATGTGTCTTGCACTTTTCTTTGCTATCAATAAGTTGAGGCA
TTATATGCAGACGTTCACAGTTCATCTAGTAACAAAGGCGGATCCTATAAAGTATGTTCTATCTAGGTCAATTATCTCTGGACGCTTAGCCAAATGGGCAGTTCTACTTC
AACAATATGACATTGTTTATATTCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTTTCATATGAAGAAATGACAGCTTTCAGGACTCCAAAGAAAATATATTATTACAAGGTGATACCCTTTGGATTGAAAAATGTTGGTGTCACTTATCAACGTGC
TATGCAAAAAGTGTTTGACGATATGCTACATAAGTATGTTGGGTGTTATGTTGATGACTTTGTGGTTAAATCTGAGAGACGACAAGACCATTTGAAGGATCTAAAAATTG
TGTTCGACTGCTTGCGAAAATATCAGCTAAGGATGAACCCTCTCAAATGCGCGTTCGATGTGACTTCAGGAAAGTTTCTTGGCTTCATTGTAAGGTACCGAGGGATTGAT
ATAGACCAGTCCAAGATTGATGCCATTCAGAAGATGCCAAGGCCAAAGAGTTTACATGACCTAAGAAGTCTTCAGGGACAATTGGCTTACATTCGAAGGTTCATCTCCAA
CATGGCCAGTCAGTGCCAACCTTTTAAAACGTTGATGAGAAAAGGAGAAAATTTTATGTGCGATGAGGCTTGTCAGAATTTTTTTGATAGCATAAAGAAATACTTGCTTA
ATCAACCAGTATTAAAAGCTCCAGTACCTAGCAAGCCATTAATATTGTACATTACTGCACAAGAAAGGTCTCTAGGCGCATTCTTGGCGCAAGAAGAGGAGAAGGGAAAG
GAATGTGCTCTCTACTATCTAAGCAGAACCTTAGTTGAGGCCAAAGTTAACTATTCTCTCATTGAGAAAATGTGTCTTGCACTTTTCTTTGCTATCAATAAGTTGAGGCA
TTATATGCAGACGTTCACAGTTCATCTAGTAACAAAGGCGGATCCTATAAAGTATGTTCTATCTAGGTCAATTATCTCTGGACGCTTAGCCAAATGGGCAGTTCTACTTC
AACAATATGACATTGTTTATATTCCCTAG
Protein sequenceShow/hide protein sequence
MALSYEEMTAFRTPKKIYYYKVIPFGLKNVGVTYQRAMQKVFDDMLHKYVGCYVDDFVVKSERRQDHLKDLKIVFDCLRKYQLRMNPLKCAFDVTSGKFLGFIVRYRGID
IDQSKIDAIQKMPRPKSLHDLRSLQGQLAYIRRFISNMASQCQPFKTLMRKGENFMCDEACQNFFDSIKKYLLNQPVLKAPVPSKPLILYITAQERSLGAFLAQEEEKGK
ECALYYLSRTLVEAKVNYSLIEKMCLALFFAINKLRHYMQTFTVHLVTKADPIKYVLSRSIISGRLAKWAVLLQQYDIVYIP