| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0036644.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 6.4e-101 | 87.74 | Show/hide |
Query: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSL
MKDLGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVSPVRT FDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV SRYTH+
Subjt: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSL
Query: DRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGD
+RYHWDAL HLLRYLKGTIDYCLHF KFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTMESEFIALELA Q A+WIK+LLGD
Subjt: DRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGD
Query: VPLWGTYVPVSI
VPLWGT VPV I
Subjt: VPLWGTYVPVSI
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| KAA0049695.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 4.9e-109 | 87.67 | Show/hide |
Query: ELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPD
EL+TDTK FLSSHFEMKDLGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFD FDVSPVRT FDASKHL KNKGDSVSQPEYAKIIGSVMYLMNYTRPD
Subjt: ELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPD
Query: IAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALE
IAYAV SRYTH+ DRYHWD L HLLRYLKGTIDYCL+FNKFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTMESEFIALE
Subjt: IAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALE
Query: LARQGAKWIKDLLGDVPLWGTYVPVSI
LA Q A+WIK+LLGDVPLWGTYVPVSI
Subjt: LARQGAKWIKDLLGDVPLWGTYVPVSI
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| TYK01593.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 7.6e-118 | 100 | Show/hide |
Query: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRYTHSLDRY
MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRYTHSLDRY
Subjt: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRYTHSLDRY
Query: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
Subjt: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
Query: WGTYVPVSI
WGTYVPVSI
Subjt: WGTYVPVSI
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| TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.9e-113 | 88.51 | Show/hide |
Query: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMY
MLIFGTN ELITDTK FLSSHFEMKDLGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVSPVRT FDASKHLKKNKGDSVSQPEYAKIIGSVMY
Subjt: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMY
Query: LMNYTRPDIAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTM
LMNYTRPDIAYAV SRYTH+ +RYHWDAL HLLRYLKGTIDYCLHF KFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTM
Subjt: LMNYTRPDIAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTM
Query: ESEFIALELARQGAKWIKDLLGDVPLWGTYVPVSI
ESEFIALELA Q A+WIK+LLGDVPLWGT VPVSI
Subjt: ESEFIALELARQGAKWIKDLLGDVPLWGTYVPVSI
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| TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 2.4e-100 | 88.52 | Show/hide |
Query: LGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSLDRY
LGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVSPVRT FDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV SRYTH+ +RY
Subjt: LGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSLDRY
Query: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
HWDAL HLLRYLKGTIDYCLHF KFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTMESEFIALELARQ A+WIK+LLGDVPL
Subjt: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
Query: WGTYVPVSI
WGT VPVSI
Subjt: WGTYVPVSI
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SZD1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.1e-101 | 87.74 | Show/hide |
Query: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSL
MKDLGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVSPVRT FDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV SRYTH+
Subjt: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSL
Query: DRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGD
+RYHWDAL HLLRYLKGTIDYCLHF KFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTMESEFIALELA Q A+WIK+LLGD
Subjt: DRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGD
Query: VPLWGTYVPVSI
VPLWGT VPV I
Subjt: VPLWGTYVPVSI
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| A0A5A7U7W6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.4e-109 | 87.67 | Show/hide |
Query: ELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPD
EL+TDTK FLSSHFEMKDLGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFD FDVSPVRT FDASKHL KNKGDSVSQPEYAKIIGSVMYLMNYTRPD
Subjt: ELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPD
Query: IAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALE
IAYAV SRYTH+ DRYHWD L HLLRYLKGTIDYCL+FNKFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTMESEFIALE
Subjt: IAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALE
Query: LARQGAKWIKDLLGDVPLWGTYVPVSI
LA Q A+WIK+LLGDVPLWGTYVPVSI
Subjt: LARQGAKWIKDLLGDVPLWGTYVPVSI
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| A0A5D3BPG1 Ty1-copia retrotransposon protein | 3.7e-118 | 100 | Show/hide |
Query: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRYTHSLDRY
MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRYTHSLDRY
Subjt: MKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRYTHSLDRY
Query: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
Subjt: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
Query: WGTYVPVSI
WGTYVPVSI
Subjt: WGTYVPVSI
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| A0A5D3C5T2 Ty1-copia retrotransposon protein | 9.3e-114 | 88.51 | Show/hide |
Query: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMY
MLIFGTN ELITDTK FLSSHFEMKDLGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVSPVRT FDASKHLKKNKGDSVSQPEYAKIIGSVMY
Subjt: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMY
Query: LMNYTRPDIAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTM
LMNYTRPDIAYAV SRYTH+ +RYHWDAL HLLRYLKGTIDYCLHF KFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTM
Subjt: LMNYTRPDIAYAV---SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTM
Query: ESEFIALELARQGAKWIKDLLGDVPLWGTYVPVSI
ESEFIALELA Q A+WIK+LLGDVPLWGT VPVSI
Subjt: ESEFIALELARQGAKWIKDLLGDVPLWGTYVPVSI
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| A0A5D3DSQ3 Ty1-copia retrotransposon protein | 1.2e-100 | 88.52 | Show/hide |
Query: LGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSLDRY
LGEAD+ILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVSPVRT FDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV SRYTH+ +RY
Subjt: LGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV---SRYTHSLDRY
Query: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
HWDAL HLLRYLKGTIDYCLHF KFPAVLE Y DANW T+NDEVNS SGYVF LGG ISWKS KQTCIARSTMESEFIALELARQ A+WIK+LLGDVPL
Subjt: HWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
Query: WGTYVPVSI
WGT VPVSI
Subjt: WGTYVPVSI
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.1e-25 | 34.58 | Show/hide |
Query: KLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV-
K +L F M DL E +G++I + + L QS YV+KIL KF+ + + V T + + + D +IG +MY+M TRPD+ AV
Subjt: KLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV-
Query: --SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNK---FPAVLEEYYDANWATNNDEVNSISGYVF-FLGGRVISWKSAKQTCIARSTMESEFIALELA
SRY+ + W L +LRYLKGTID L F K F + Y D++WA + + S +GY+F +I W + +Q +A S+ E+E++AL A
Subjt: --SRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNK---FPAVLEEYYDANWATNNDEVNSISGYVF-FLGGRVISWKSAKQTCIARSTMESEFIALELA
Query: RQGAKWIKDLLGDV
+ A W+K LL +
Subjt: RQGAKWIKDLLGDV
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.2e-35 | 39.5 | Show/hide |
Query: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTS--MSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLK----------KNKGDSVSQ
MLI G + LI K LS F+MKDLG A ILG+KI + +TS + L Q Y+E++L++F+ + PV T + HLK + KG+
Subjt: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTS--MSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLK----------KNKGDSVSQ
Query: PEYAKIIGSVMYLMNYTRPDIAYA---VSRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWK
P Y+ +GS+MY M TRPDIA+A VSR+ + + HW+A+ +LRYL+GT CL F +L+ Y DA+ A + D S +GY+F G ISW+
Subjt: PEYAKIIGSVMYLMNYTRPDIAYA---VSRYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEEYYDANWATNNDEVNSISGYVFFLGGRVISWK
Query: SAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
S Q C+A ST E+E+IA + W+K L ++ L
Subjt: SAKQTCIARSTMESEFIALELARQGAKWIKDLLGDVPL
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| P92519 Uncharacterized mitochondrial protein AtMg00810 | 3.0e-24 | 31.34 | Show/hide |
Query: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMY
+L+ G++ L+ LSS F MKDLG LG++I+ + + + L Q+ Y E+IL D P+ T + + ++ I+G++ Y
Subjt: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMY
Query: LMNYTRPDIAYAVS---RYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARST
L TRPDI+YAV+ + H +D L +LRY+KGTI + L+ +K + ++ + D++WA S +G+ FLG +ISW + +Q ++RS+
Subjt: LMNYTRPDIAYAVS---RYTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARST
Query: MESEFIALELARQGAKW
E+E+ AL L W
Subjt: MESEFIALELARQGAKW
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 6.8e-29 | 34.47 | Show/hide |
Query: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQP-EYAKIIGSVM
+LI G + L+ +T LS F +KD E LG++ ++ T + L Q Y+ +L + + PV T S L G ++ P EY I+GS+
Subjt: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQP-EYAKIIGSVM
Query: YLMNYTRPDIAYAVSR---YTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARS
YL +TRPDI+YAV+R + H H AL +LRYL GT ++ + K + L Y DA+WA + D+ S +GY+ +LG ISW S KQ + RS
Subjt: YLMNYTRPDIAYAVSR---YTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARS
Query: TMESEFIALELARQGAKWIKDLLGDVPLWGTYVPV
+ E+E+ ++ +WI LL ++ + T PV
Subjt: TMESEFIALELARQGAKWIKDLLGDVPLWGTYVPV
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 8.1e-30 | 34.04 | Show/hide |
Query: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQP-EYAKIIGSVM
+LI G +T L+ T LS F +K+ + LG++ ++ + L Q Y +L + + PV T S L + G + P EY I+GS+
Subjt: MLIFGTNTELITDTKLFLSSHFEMKDLGEADIILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQP-EYAKIIGSVM
Query: YLMNYTRPDIAYAVSR---YTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARS
YL +TRPD++YAV+R Y H HW+AL +LRYL GT D+ + K + L Y DA+WA + D+ S +GY+ +LG ISW S KQ + RS
Subjt: YLMNYTRPDIAYAVSR---YTHSLDRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEEYYDANWATNNDEVNSISGYVFFLGGRVISWKSAKQTCIARS
Query: TMESEFIALELARQGAKWIKDLLGDVPLWGTYVPV
+ E+E+ ++ +WI LL ++ + ++ PV
Subjt: TMESEFIALELARQGAKWIKDLLGDVPLWGTYVPV
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