CuGenDBv2

Gene ID	Cmc06g0165041
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:16339108..16339875
RNA-Seq Expression	Cmc06g0165041
Synteny	Cmc06g0165041
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.5e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.5e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]

5.5e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

KAA0061889.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.5e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]

5.5e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

2.7e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

A0A5A7U2V7 Reverse transcriptase

2.7e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

A0A5A7UUL6 Reverse transcriptase

2.7e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

A0A5D3BHI1 Reverse transcriptase

2.7e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

A0A5D3BS67 Reverse transcriptase

2.7e-138

97.22

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLA LYVDKIVSQYGVPVSIVS+RDPRFTSKFWPSLQ AMGTG KFSTSFHPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL
        RRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYI PYQITERVGPAAYRL
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFIRKGKLSPRYIWPYQITERVGPAAYRL

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.5e-29

30.98

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q A ++  ++++ +G P  I+++ D  FTS+ W    +      KFS  + PQ DGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK
        T QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++   P  +P+      ++     E  Q T    + ++E+L     + K Y D 
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK

Query:  RRRNL-EFQVGDQVFLKLSPWRGVIRFIRK-GKLSPRYIWPYQITERVGPAAYRL
        + + + EFQ GD V +K    R    F+ K  KL+P +  P+ + ++ GP  Y L
Subjt:  RRRNL-EFQVGDQVFLKLSPWRGVIRFIRK-GKLSPRYIWPYQITERVGPAAYRL

P0CT41 Transposon Tf2-12 polyprotein

1.5e-29

30.98

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q A ++  ++++ +G P  I+++ D  FTS+ W    +      KFS  + PQ DGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK
        T QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++   P  +P+      ++     E  Q T    + ++E+L     + K Y D 
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK

Query:  RRRNL-EFQVGDQVFLKLSPWRGVIRFIRK-GKLSPRYIWPYQITERVGPAAYRL
        + + + EFQ GD V +K    R    F+ K  KL+P +  P+ + ++ GP  Y L
Subjt:  RRRNL-EFQVGDQVFLKLSPWRGVIRFIRK-GKLSPRYIWPYQITERVGPAAYRL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

4.7e-31

33.85

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDF+ GLP TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I S+RD R T+  +  L   +G     S++ HPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD
        TIQTL  +LRA V     +W  +LP +EF YN+    ++G +P+E   G    TP     +EV  R     EL +         +E L  AQ   ++  +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD

Query:  KRRRNLEFQVGDQVFLKLSPWRGVIRFIRKG---KLSPRYIWPYQITERVGPAAYRL
        +RR+ L   +GD V +          + +KG   K+   Y+ P+++ +++   AY L
Subjt:  KRRRNLEFQVGDQVFLKLSPWRGVIRFIRKG---KLSPRYIWPYQITERVGPAAYRL

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.4e-30

33.46

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDF+ GLP TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I S+RD R T+  +  L   +G     S++ HPQ DGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD
        TIQTL  +LRA       +W  +LP +EF YN+    ++G +P+E   G    TP     +EV  R     EL +         +E L  AQ   ++  +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD

Query:  KRRRNLEFQVGDQVFLKLSPWRGVIRFIRKG---KLSPRYIWPYQITERVGPAAYRL
        +RR+ L   +GD V +          + +KG   K+   Y+ P+++ +++   AY L
Subjt:  KRRRNLEFQVGDQVFLKLSPWRGVIRFIRKG---KLSPRYIWPYQITERVGPAAYRL

Q9UR07 Transposon Tf2-11 polyprotein

1.5e-29

30.98

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER
        MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q A ++  ++++ +G P  I+++ D  FTS+ W    +      KFS  + PQ DGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK
        T QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++   P  +P+      ++     E  Q T    + ++E+L     + K Y D 
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK

Query:  RRRNL-EFQVGDQVFLKLSPWRGVIRFIRK-GKLSPRYIWPYQITERVGPAAYRL
        + + + EFQ GD V +K    R    F+ K  KL+P +  P+ + ++ GP  Y L
Subjt:  RRRNL-EFQVGDQVFLKLSPWRGVIRFIRK-GKLSPRYIWPYQITERVGPAAYRL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAATGACATC
TACGTTAGACCAGCTAGCGATATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAAATAGGGATCCGAGGTTTACTTCTAAATTTTGGC
CTAGTTTACAGAACGCAATGGGAACAGGGCCAAAGTTTAGTACATCATTTCATCCCCAAATAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGA
GCATGTGTCCTACAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAAGCCTT
ATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAG
AAAATCTGAGGAAAGCCCAAGATCGACAGAAAAGTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGA
GGTGTTATTCGTTTCATAAGAAAAGGTAAGTTAAGTCCTAGATATATTTGGCCATATCAGATAACGGAACGAGTGGGACCAGCAGCGTATAGACTTAGTTGCCAATAG

mRNA sequence

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Protein sequence

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MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLAILYVDKIVSQYGVPVSIVSNRDPRFTSKFWPSLQNAMGTGPKFSTSFHPQIDGQSERTIQTLEDMLR
ACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWR
GVIRFIRKGKLSPRYIWPYQITERVGPAAYRLSCQ

Cmc06g0165041 (gene) of Melon (Charmono) v1.1 genome