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Cmc06g0165201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0165201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:16598852..16599208
RNA-Seq ExpressionCmc06g0165201
SyntenyCmc06g0165201
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

KAA0037582.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]2.3e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

TYK27290.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase1.1e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

A0A5A7U2V7 Reverse transcriptase1.1e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

A0A5A7UUL6 Reverse transcriptase1.1e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

A0A5D3BHI1 Reverse transcriptase1.1e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

A0A5D3BS67 Reverse transcriptase1.1e-5494.74Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSFEL
        TA RTRYG   F +
Subjt:  TALRTRYGIMSFEL

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein3.3e-1937.5Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        + P +++ +  ++ + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N YPLP I+ L  +++G+ +F+K+DL+S YH ++VR+ D  K
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSF
         A R   G+  +
Subjt:  TALRTRYGIMSF

P31843 RNA-directed DNA polymerase homolog2.5e-1957.53Show/hide
Query:  TLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL
        +LR+CIDYR L KVTI+NKYP+PR+DDLFD+L  A  F+K+DLRSGY Q+++ + D  KT   TRYG   F +
Subjt:  TLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.3e-2345.69Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRT-
        +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTA  T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRT-

Query:  ----RYGIMSFELCHS
             Y +M F L ++
Subjt:  ----RYGIMSFELCHS

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.3e-2345.69Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRT-
        +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTA  T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRT-

Query:  ----RYGIMSFELCHS
             Y +M F L ++
Subjt:  ----RYGIMSFELCHS

Q9UR07 Transposon Tf2-11 polyprotein3.3e-1937.5Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        + P +++ +  ++ + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N YPLP I+ L  +++G+ +F+K+DL+S YH ++VR+ D  K
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TALRTRYGIMSF
         A R   G+  +
Subjt:  TALRTRYGIMSF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCACCGTGGGGAGCACCAGTGCTTTTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAAACAGCATTAAGAACGAGGTATGGCATTATG
AGTTTCGAGTTATGCCATTCGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCACCGTGGGGAGCACCAGTGCTTTTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAAACAGCATTAAGAACGAGGTATGGCATTATG
AGTTTCGAGTTATGCCATTCGGTTTAA
Protein sequenceShow/hide protein sequence
MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIM
SFELCHSV