CuGenDBv2

Gene ID	Cmc06g0165221
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr06:16766459..16767053
RNA-Seq Expression	Cmc06g0165221
Synteny	Cmc06g0165221
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

4.9e-77

81.32

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR     F                         APFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

KAA0032356.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.9e-77

90.57

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD QTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF-QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR        APFEALYG+CCRSPVCWGEVGEQRLMG ELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF-QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

KAA0042464.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.9e-81

79.29

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRLDHACIPLRVDRRVMQM
        LNQVLEDMLR     F                         APFEALY RCCRSPVCWGEVGEQRLMGPELVQ   +  RRLDHACIPLRV RRVMQM
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRLDHACIPLRVDRRVMQM

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

4.9e-77

81.32

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR     F                         APFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

4.9e-77

81.32

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR     F                         APFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQP5 Ty3-gypsy retrotransposon protein

2.3e-77

90.57

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD QTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF-QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR        APFEALYG+CCRSPVCWGEVGEQRLMG ELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF-QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

A0A5A7TGC8 Ty3-gypsy retrotransposon protein

9.2e-82

79.29

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRLDHACIPLRVDRRVMQM
        LNQVLEDMLR     F                         APFEALY RCCRSPVCWGEVGEQRLMGPELVQ   +  RRLDHACIPLRV RRVMQM
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRLDHACIPLRVDRRVMQM

A0A5A7TPA9 Pol protein

2.3e-77

81.32

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR     F                         APFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

A0A5A7U7V9 Reverse transcriptase

2.3e-77

81.32

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR     F                         APFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

A0A5A7VJE2 Reverse transcriptase

2.3e-77

81.32

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL
        LNQVLEDMLR     F                         APFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEA +++
Subjt:  LNQVLEDMLRRVHWNF------------------------QAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRL

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

5.3e-18

41.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRV
         NQ +E +LR V
Subjt:  LNQVLEDMLRRV

P0CT41 Transposon Tf2-12 polyprotein

5.3e-18

41.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRV
         NQ +E +LR V
Subjt:  LNQVLEDMLRRV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.8e-19

44.55

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLR
          Q L  +LR
Subjt:  LNQVLEDMLR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.8e-19

44.55

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLR
          Q L  +LR
Subjt:  LNQVLEDMLR

Q9UR07 Transposon Tf2-11 polyprotein

5.3e-18

41.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRRV
         NQ +E +LR V
Subjt:  LNQVLEDMLRRV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATCTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTA
TACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGA
AGGGTTTACAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCCTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTACGG
CGTGTGCATTGGAATTTCCAGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTT
AGTTCAGTCTACTAACGAAGCATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGA

mRNA sequence

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Protein sequence

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MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR
RVHWNFQAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAFRRLDHACIPLRVDRRVMQM

Cmc06g0165221 (gene) of Melon (Charmono) v1.1 genome