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Cmc06g0165231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0165231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:16768105..16768428
RNA-Seq ExpressionCmc06g0165231
SyntenyCmc06g0165231
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036671.1 gag protease polyprotein [Cucumis melo var. makuwa]6.5e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
KAA0048687.1 pol protein [Cucumis melo var. makuwa]6.5e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
KAA0060256.1 gag protease polyprotein [Cucumis melo var. makuwa]6.5e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
KAA0062124.1 gag protease polyprotein [Cucumis melo var. makuwa]3.8e-4898Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
KAA0066266.1 pol protein [Cucumis melo var. makuwa]6.5e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
TrEMBL top hitse value%identityAlignment
A0A5A7TXE4 Reverse transcriptase3.1e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
A0A5A7UDB1 Reverse transcriptase3.1e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
A0A5A7V223 Reverse transcriptase3.1e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
A0A5A7V492 Reverse transcriptase1.8e-4898Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
A0A5A7VIT9 Reverse transcriptase3.1e-4899Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.4e-1540.21Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAV
        M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAV
P0CT34 Transposon Tf2-1 polyprotein1.7e-1438Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        M +G++ APA F  ++N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
P0CT35 Transposon Tf2-2 polyprotein1.7e-1438Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        M +G++ APA F  ++N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
P0CT41 Transposon Tf2-12 polyprotein1.7e-1438Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        M +G++ APA F  ++N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
P20825 Retrovirus-related Pol polyprotein from transposon 2971.8e-1639Show/hide
Query:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
        M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+  +
Subjt:  MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.8e-0949.09Show/hide
Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGW
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTGGATGAACAGAGTGTTCAGGGAGTTCCTAGATACTTTCGTGATTGTGTTTATCGACGATATCTTGAT
ATACTCTAAGACGGAGGCCGAACACGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGTTTTGGCTGAAAC
AGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGGACCCGACCTTCCACAGTCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTGGATGAACAGAGTGTTCAGGGAGTTCCTAGATACTTTCGTGATTGTGTTTATCGACGATATCTTGAT
ATACTCTAAGACGGAGGCCGAACACGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGTTTTGGCTGAAAC
AGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGGACCCGACCTTCCACAGTCAGTGA
Protein sequenceShow/hide protein sequence
MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWDPTFHSQ