CuGenDBv2

Gene ID	Cmc06g0165561
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:17463856..17465023
RNA-Seq Expression	Cmc06g0165561
Synteny	Cmc06g0165561
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025998.1 pol protein [Cucumis melo var. makuwa]

5.7e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

KAA0063793.1 pol protein [Cucumis melo var. makuwa]

5.7e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

TYK01576.1 pol protein [Cucumis melo var. makuwa]

5.7e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

TYK06888.1 pol protein [Cucumis melo var. makuwa]

5.7e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

TYK20443.1 pol protein [Cucumis melo var. makuwa]

5.7e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIJ5 Reverse transcriptase

2.8e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

A0A5A7V2A0 Reverse transcriptase

2.8e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

A0A5A7V6R2 Reverse transcriptase

2.8e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

A0A5D3BTN0 Reverse transcriptase

2.8e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

A0A5D3C6W3 Reverse transcriptase

2.8e-159

79.2

Show/hide

Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR
        IVFIDDILIYSK                   +L  + +   FW                                      R F   + YYRRFVEDFSR
Subjt:  IVFIDDILIYSKM------------------RLSTRSTCTRFW--------------------------------------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        IASPLTQLTRKGT FVWSP CE SFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYAS QLKIHEQNYP HDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
        RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTP

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.3e-54

32.36

Show/hide

Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI
        R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    + KTAF +++GHYE++ M FGL NAPA F   MN + +  L+   +
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI

Query:  VFIDDILIYS----------------------KMRLS----TRSTCTRFWRLFEPTSC------------------------------YYRRFVEDFSRI
        V++DDI+++S                      K++L      +   T    +  P                                 YYR+F+ +F+ I
Subjt:  VFIDDILIYS----------------------KMRLS----TRSTCTRFWRLFEPTSC------------------------------YYRRFVEDFSRI

Query:  ASPLTQLTRKG-TLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        A P+T+  +K   +   +P  +S+F++LK  +   P+L VPD +  F + +DAS   LG VL Q G  ++Y S  L  HE NY   + EL A+V+A K +
Subjt:  ASPLTQLTRKG-TLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPYS
        RHYL G   +I +DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR +      +++QT +S
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPYS

P0CT34 Transposon Tf2-1 polyprotein

4.2e-48

33.06

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Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G++ APA F   +N +  +  +S V
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKMR-------------------LSTRSTC------TRF----------------------W---------RLFEPTSCYYRRFVEDFSR
        + ++DDILI+SK                     +  ++ C       +F                      W         R F  +  Y R+F+   S+
Subjt:  IVFIDDILIYSKMR-------------------LSTRSTC------TRF----------------------W---------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----VVAYASCQLKIHEQNYPAHDLELAAVVF
        +  PL  L +K   + W+PT   + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+        V Y S ++   + NY   D E+ A++ 
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----VVAYASCQLKIHEQNYPAHDLELAAVVF

Query:  ALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
        +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR V
Subjt:  ALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

P0CT41 Transposon Tf2-12 polyprotein

4.2e-48

33.06

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Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G++ APA F   +N +  +  +S V
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKMR-------------------LSTRSTC------TRF----------------------W---------RLFEPTSCYYRRFVEDFSR
        + ++DDILI+SK                     +  ++ C       +F                      W         R F  +  Y R+F+   S+
Subjt:  IVFIDDILIYSKMR-------------------LSTRSTC------TRF----------------------W---------RLFEPTSCYYRRFVEDFSR

Query:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----VVAYASCQLKIHEQNYPAHDLELAAVVF
        +  PL  L +K   + W+PT   + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+        V Y S ++   + NY   D E+ A++ 
Subjt:  IASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----VVAYASCQLKIHEQNYPAHDLELAAVVF

Query:  ALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
        +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR V
Subjt:  ALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

P20825 Retrovirus-related Pol polyprotein from transposon 297

3.7e-52

33.24

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Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI
        R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  I KTAF ++ GHYE++ M FGL NAPA F   MN + +  L+   +
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI

Query:  VFIDDILIYS----------------------KMRLSTRS----------------------------------TCTRFWRLFEPTSCYYRRFVEDFSRI
        V++DDI+I+S                      K++L                                      T  +  R F   + YYR+F+ +++ I
Subjt:  VFIDDILIYS----------------------KMRLSTRS----------------------------------TCTRFWRLFEPTSCYYRRFVEDFSRI

Query:  ASPLTQLTRKGT-LFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW
        A P+T   +K T +         +F++LK  ++  P+L +PD    FV+ +DAS   LG VL Q G  +++ S  L  HE NY A + EL A+V+A K +
Subjt:  ASPLTQLTRKGT-LFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQLKIHEQNYPAHDLELAAVVFALKIW

Query:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
        RHYL G +  I +DH+ L++    KE   +  RW   + +Y  +I Y  GK N VADALSR
Subjt:  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.2e-50

31.12

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Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI
        R+ +D++ LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +++ DIPKTAF +  G YEF+ + FGL NAPA+F  +++ + ++ +     
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI

Query:  VFIDDILIYSK--------MRLSTRS------------------------------------------------TCTRFWRLFEPTSCYYRRFVEDFSRI
        V+IDDI+++S+        +RL   S                                                T  +  + F   + YYR+F++D++++
Subjt:  VFIDDILIYSK--------MRLSTRS------------------------------------------------TCTRFWRLFEPTSCYYRRFVEDFSRI

Query:  ASPLTQLTR-----------KGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ----QGKVVAYASCQLKIHEQNYPAH
        A PLT LTR                    T   SF +LK  L ++ +L  P  +  F + +DAS   +G VL Q    + + +AY S  L   E+NY   
Subjt:  ASPLTQLTR-----------KGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ----QGKVVAYASCQLKIHEQNYPAH

Query:  DLELAAVVFALKIWRHYLYGE-KIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
        + E+ A++++L   R YLYG   I++YTDH+ L +    +  N + +RW   +++Y+CE++Y PGK+NVVADALSR
Subjt:  DLELAAVVFALKIWRHYLYGE-KIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.4e-06

43.4

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Query:  YYRRFVEDFSRIASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPD
        YYRRFV+++ +I  PLT+L +K +L  W+     +F+ LK  + T PVL +PD
Subjt:  YYRRFVEDFSRIASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPD

Sequences

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CDS sequence

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ATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACAGTTAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAGTTGCAGGGAGCCACTGTCTT
TTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGACGGTGATATTCCCAAGACGGCCTTTCGTTCGAGGTACGGACATTACGAGTTCATTGTGATGT
CTTTCGGCTTGACTAACGCTCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGATTTTCTAGACTCGTTCGTCATAGTCTTCATTGATGACATCTTGATTTAC
TCTAAAATGAGGCTGAGCACGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAACAAGTTGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAG
CCCGTTGACCCAGTTGACCAGGAAGGGAACCCTTTTTGTCTGGAGCCCAACATGCGAGAGTAGCTTTCAGGAGCTCAAGCAGAAGCTAGTGACTGCACCAGTCCTGACAG
TGCCCGATGGGTCGGGAAACTTTGTGATCTATAGCGATGCCTCCAAGAAGGGACTGGGCTGTGTCCTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCTGCCAGTTG
AAGATTCATGAGCAGAACTACCCTGCCCACGACTTGGAGTTGGCAGCTGTAGTCTTTGCACTGAAGATATGGAGGCACTACCTGTACGGTGAGAAGATACAGATTTACAC
CGACCATAAGAGCCTGAAGTACTTCTTCACTCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTGGTGAAAGACTATGACTGCGAGATCCTGTACCACCCAG
GTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGGAAGGTTGCACATTCAGCAGCGCTAATCACCAAGCAGACCCCTTACTCAGGGATTTTGAGAGGGCGAGATTGCAGT
CTCAGTAGGTGA

mRNA sequence

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Protein sequence

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MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIY
SKMRLSTRSTCTRFWRLFEPTSCYYRRFVEDFSRIASPLTQLTRKGTLFVWSPTCESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASCQL
KIHEQNYPAHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPYSGILRGRDCS
LSR

Cmc06g0165561 (gene) of Melon (Charmono) v1.1 genome