CuGenDBv2

Gene ID	Cmc06g0165671
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:17640877..17641845
RNA-Seq Expression	Cmc06g0165671
Synteny	Cmc06g0165671
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

8.4e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

8.4e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

8.4e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]

8.4e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]

8.4e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

4.1e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

A0A5A7U2V7 Reverse transcriptase

4.1e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

A0A5A7UUL6 Reverse transcriptase

4.1e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

A0A5D3BHI1 Reverse transcriptase

4.1e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

A0A5D3BS67 Reverse transcriptase

4.1e-176

91.96

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWK EHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLY+DKIV QYGVP
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC
        VSIVSDRD RFTSKFWPSLQKA+G  LKFSTSFHPQTDGQSERTIQTLEDML+ACVLQLKGSWDTHLPLMEFAYNNNYQSS              RTPVC
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSS--------------RTPVC

Query:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE
        WNEVGE KLVGPELVQITTNNIKLIRENL+ AQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRF RKGKLSPRYIGPYQITERVGPAAYRLELPIE
Subjt:  WNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIE

Query:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS
        LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLS
Subjt:  LARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.3e-42

31.66

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        ++++I EYV  C  CQ  K    +P G L P+P  E   E ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  +++  +G P
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV
          I++D D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +L+        +W  H+ L++ +YNN                Y  + +P+
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV

Query:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP
           E+  +     E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K +   G +   +  KL+P + GP+ + ++ GP  Y L+LP
Subjt:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP

Query:  IELARI-HDVFHVSMLRKY
          +  +    FHVS L KY
Subjt:  IELARI-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein

3.3e-42

31.66

Show/hide

Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        ++++I EYV  C  CQ  K    +P G L P+P  E   E ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  +++  +G P
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV
          I++D D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +L+        +W  H+ L++ +YNN                Y  + +P+
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV

Query:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP
           E+  +     E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K +   G +   +  KL+P + GP+ + ++ GP  Y L+LP
Subjt:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP

Query:  IELARI-HDVFHVSMLRKY
          +  +    FHVS L KY
Subjt:  IELARI-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein

3.3e-42

31.66

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Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        ++++I EYV  C  CQ  K    +P G L P+P  E   E ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  +++  +G P
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV
          I++D D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +L+        +W  H+ L++ +YNN                Y  + +P+
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV

Query:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP
           E+  +     E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K +   G +   +  KL+P + GP+ + ++ GP  Y L+LP
Subjt:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP

Query:  IELARI-HDVFHVSMLRKY
          +  +    FHVS L KY
Subjt:  IELARI-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein

3.3e-42

31.66

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Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        ++++I EYV  C  CQ  K    +P G L P+P  E   E ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  +++  +G P
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV
          I++D D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +L+        +W  H+ L++ +YNN                Y  + +P+
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV

Query:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP
           E+  +     E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K +   G +   +  KL+P + GP+ + ++ GP  Y L+LP
Subjt:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP

Query:  IELARI-HDVFHVSMLRKY
          +  +    FHVS L KY
Subjt:  IELARI-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein

3.3e-42

31.66

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Query:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP
        ++++I EYV  C  CQ  K    +P G L P+P  E   E ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  +++  +G P
Subjt:  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVP

Query:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV
          I++D D  FTS+ W          +KFS  + PQTDGQ+ERT QT+E +L+        +W  H+ L++ +YNN                Y  + +P+
Subjt:  VSIVSDRDLRFTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNN---------------NYQSSRTPV

Query:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP
           E+  +     E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K +   G +   +  KL+P + GP+ + ++ GP  Y L+LP
Subjt:  CWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQDRQKSYADKRRRNL-EFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELP

Query:  IELARI-HDVFHVSMLRKY
          +  +    FHVS L KY
Subjt:  IELARI-HDVFHVSMLRKY

Arabidopsis top hits

e value

%identity

Alignment

AT1G42190.1 GAG/POL/ENV polyprotein

8.3e-04

46.51

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Query:  YRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDL
        Y+L+LP  +   H VFHVSMLRK I    +V+ E P +L E++
Subjt:  YRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDL

Sequences

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CDS sequence

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ATGAAGCAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAGACAGAGACCAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTG
GAAACGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACTAAGACGACACGATTTA
TACCGATTAAAATGACATCTACGTTAGACCAGCTAGCGAGATTATATATTGATAAGATTGTGGGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCTGAGG
TTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATAGGAATATGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAAC
TTTAGAGGACATGTTGAAAGCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGCAGAACTC
CTGTGTGCTGGAATGAAGTGGGAGAGTGGAAGTTAGTAGGTCCTGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATAAGAGAAAATCTAAAGATAGCCCAAGAT
CGACAGAAAAGTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAGGTGTTATTCGTTTCGAAAGAAA
AGGTAAGTTAAGTCCTAGATATATTGGGCCATATCAGATAACGGAACGAGTTGGACCAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTT
TCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCACATGTGTTGCAAGAGCAACCTGTTGAATTAAAAGAAGATTTGAGTTAA

mRNA sequence

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Protein sequence

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MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKREHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYIDKIVGQYGVPVSIVSDRDLR
FTSKFWPSLQKAIGIWLKFSTSFHPQTDGQSERTIQTLEDMLKACVLQLKGSWDTHLPLMEFAYNNNYQSSRTPVCWNEVGEWKLVGPELVQITTNNIKLIRENLKIAQD
RQKSYADKRRRNLEFQVGDQVFLKLSPWRGVIRFERKGKLSPRYIGPYQITERVGPAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLS

Cmc06g0165671 (gene) of Melon (Charmono) v1.1 genome