CuGenDBv2

Gene ID	Cmc06g0165691
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr06:17672083..17672982
RNA-Seq Expression	Cmc06g0165691
Synteny	Cmc06g0165691
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-157

95.92

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIW+MDVKTAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK+LVRYSMQNSKKGLLPF H VHLSKEQ PKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNPGLDHWT VKI+LKYL RTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

KAA0033121.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-153

93.88

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIWKMDV TAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KV FLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPF H VHLSKEQCPKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMY + CTR +ICYAV IVSRYQSN GLDHWT VKIILKYL RTRDYMLVYGAKDLILTGYTDSDFQT+KDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

9.0e-156

95.24

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIA FYDYEIW+MDVKTAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNKTLALSQATYIDK+LVRYSMQNSKKGLLPF H VHLSKEQ PKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNPGLDHWT VKIILKYL RTRDYMLVYGAKDLILTGYT+SDFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-157

95.92

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIW+MDVKTAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK+LVRYSMQNSKKGLLPF H VHLSKEQ PKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNPGLDHWT VKI+LKYL RTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

KAA0059556.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-156

95.24

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIW+MDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IK YGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLY+DDILLIGNDVGYLTDVKAWLAAQFQMKD+GEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPF H VHLSKEQCPKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNP LDHWT VKIILKYL RTRDYMLVYGAKDLIL GYTD DFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

4.4e-156

95.24

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIA FYDYEIW+MDVKTAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNKTLALSQATYIDK+LVRYSMQNSKKGLLPF H VHLSKEQ PKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNPGLDHWT VKIILKYL RTRDYMLVYGAKDLILTGYT+SDFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

A0A5A7TZD0 Gag/pol protein

1.0e-157

95.92

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIW+MDVKTAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK+LVRYSMQNSKKGLLPF H VHLSKEQ PKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNPGLDHWT VKI+LKYL RTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

A0A5A7UYE8 Gag/pol protein

1.0e-157

95.92

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIW+MDVKTAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDK+LVRYSMQNSKKGLLPF H VHLSKEQ PKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNPGLDHWT VKI+LKYL RTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

A0A5A7UZF3 Gag/pol protein

1.5e-156

95.24

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIW+MDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IK YGFDQNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KVAFLVLY+DDILLIGNDVGYLTDVKAWLAAQFQMKD+GEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPF H VHLSKEQCPKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMYAMLCTR DICYAVGIVSRYQSNP LDHWT VKIILKYL RTRDYMLVYGAKDLIL GYTD DFQTDKDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

A0A5D3CZY3 Gag/pol protein

1.2e-153

93.88

Show/hide

Query:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG
        M KSIRILLSIATFYDYEIWKMDV TAFLN NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYKKINKG
Subjt:  MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKG

Query:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP
        KV FLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPF H VHLSKEQCPKTP
Subjt:  KVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTP

Query:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        QEVEDMRRIPYASAVGSLMY + CTR +ICYAV IVSRYQSN GLDHWT VKIILKYL RTRDYMLVYGAKDLILTGYTDSDFQT+KDSRKSTS
Subjt:  QEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

8.2e-43

35.33

Show/hide

Query:  SIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVY--KKINKGK
        S R +LS+   Y+ ++ +MDVKTAFLN  L+E I+M  P+G         VCKLN++IYGLKQA+R W   F+  +K   F  +  + C+Y   K N  +
Subjt:  SIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVY--KKINKGK

Query:  VAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHL----SKEQCP
          +++LYVDD+++   D+  + + K +L  +F+M DL E ++ +GI+I  + +   + LSQ+ Y+ K+L +++M+N      P    ++     S E C 
Subjt:  VAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHL----SKEQCP

Query:  KTPQEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYG---AKDLILTGYTDSDFQTDKDSRKSTS
                    P  S +G LMY MLCTR D+  AV I+SRY S    + W  +K +L+YL  T D  L++    A +  + GY DSD+   +  RKST+
Subjt:  KTPQEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYG---AKDLILTGYTDSDFQTDKDSRKSTS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.0e-78

49.32

Show/hide

Query:  SIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVY-KKINKGKV
        SIR +LS+A   D E+ ++DVKTAFL+ +LEE I+M QPEGF   G++  VCKLN+S+YGLKQA R W ++FD+ +KS  + +   +PCVY K+ ++   
Subjt:  SIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVY-KKINKGKV

Query:  AFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQE
          L+LYVDD+L++G D G +  +K  L+  F MKDLG AQ +LG++I+R+R ++ L LSQ  YI+++L R++M+N+K    P    + LSK+ CP T +E
Subjt:  AFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQE

Query:  VEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS
          +M ++PY+SAVGSLMYAM+CTR DI +AVG+VSR+  NPG +HW  VK IL+YL  T    L +G  D IL GYTD+D   D D+RKS++
Subjt:  VEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS

P25600 Putative transposon Ty5-1 protein YCL074W

6.7e-29

32.23

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Query:  MDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGY
        MDV TAFLN  ++E I++ QP GF+ +     V +L   +YGLKQA   WN   + T+K  GF ++  E  +Y +       ++ +YVDD+L+       
Subjt:  MDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGY

Query:  LTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQEVEDMRRIPYASAVGSLMYA
           VK  L   + MKDLG+    LG+  I    N  + LS   YI K      +   K    P  +    SK     T   ++D+   PY S VG L++ 
Subjt:  LTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQEVEDMRRIPYASAVGSLMYA

Query:  MLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVY-GAKDLILTGYTDSDFQTDKDSRKST
            R DI Y V ++SR+   P   H  + + +L+YL  TR   L Y     L LT Y D+      D   ST
Subjt:  MLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVY-GAKDLILTGYTDSDFQTDKDSRKST

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

6.7e-37

35.03

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Query:  SKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKGK
        S SIRI+L +A    + I ++DV  AFL   L + ++MSQP GFI + +   VCKL +++YGLKQA R+W +     + + GF  +V +  ++       
Subjt:  SKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKGK

Query:  VAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQ
        + ++++YVDDIL+ GND   L +    L+ +F +KD  E  Y LGI+    R    L LSQ  YI  +L R +M  +K    P      LS     K   
Subjt:  VAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQ

Query:  EVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDY-MLVYGAKDLILTGYTDSDFQTDKDSRKSTS
          E      Y   VGSL Y +  TR DI YAV  +S++   P  +H   +K IL+YL  T ++ + +     L L  Y+D+D+  DKD   ST+
Subjt:  EVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDY-MLVYGAKDLILTGYTDSDFQTDKDSRKSTS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

7.2e-39

34.01

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Query:  SKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKGK
        S SIRI+L +A    + I ++DV  AFL   L + ++MSQP GF+ + +   VC+L ++IYGLKQA R+W +   T + + GF  ++ +  ++       
Subjt:  SKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKGK

Query:  VAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQ
        + ++++YVDDIL+ GND   L      L+ +F +K+  +  Y LGI+    R  + L LSQ  Y   +L R +M  +K    P      L+     K P 
Subjt:  VAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQ

Query:  EVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDY-MLVYGAKDLILTGYTDSDFQTDKDSRKSTS
          E      Y   VGSL Y +  TR D+ YAV  +S+Y   P  DHW  +K +L+YL  T D+ + +     L L  Y+D+D+  D D   ST+
Subjt:  EVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDY-MLVYGAKDLILTGYTDSDFQTDKDSRKSTS

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.6e-36

31.76

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Query:  SIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFIT-QGQE---QKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINK
        S++++L+I+  Y++ + ++D+  AFLN +L+E I+M  P G+   QG       VC L +SIYGLKQASR W ++F  T+  +GF Q+  +   + KI  
Subjt:  SIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFIT-QGQE---QKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINK

Query:  GKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKT
             +++YVDDI++  N+   + ++K+ L + F+++DLG  +Y LG++I R      + + Q  Y   +L    +   K   +P    V  S      +
Subjt:  GKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKT

Query:  PQEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAK-DLILTGYTDSDFQTDKDSRKSTS
          +  D +   Y   +G LMY  + TR DI +AV  +S++   P L H   V  IL Y+  T    L Y ++ ++ L  ++D+ FQ+ KD+R+ST+
Subjt:  PQEVEDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAK-DLILTGYTDSDFQTDKDSRKSTS

ATMG00810.1 DNA/RNA polymerases superfamily protein

4.8e-14

33.33

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Query:  FLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQEV
        +L+LYVDDILL G+    L  +   L++ F MKDLG   Y LGIQI        L LSQ  Y +++L    M + K    P    ++ S     K P   
Subjt:  FLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQEV

Query:  EDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDY-MLVYGAKDLILTGYTDSDFQTDKDSRKSTS
        +      + S VG+L Y  L TR DI YAV IV +    P L  +  +K +L+Y+  T  + + ++    L +  + DSD+     +R+ST+
Subjt:  EDMRRIPYASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDY-MLVYGAKDLILTGYTDSDFQTDKDSRKSTS

Sequences

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CDS sequence

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ATGTCAAAGTCTATAAGGATTCTCTTGTCCATCGCCACATTTTATGATTATGAAATATGGAAAATGGATGTCAAGACTGCTTTTCTGAATGACAATCTTGAAGAG
AGTATCTTTATGTCTCAGCCCGAGGGATTCATAACCCAAGGTCAAGAGCAAAAAGTTTGTAAGCTGAATCGATCTATTTATGGGTTGAAACAAGCATCTAGATCT
TGGAACATTAGGTTTGATACTACGATCAAATCCTATGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGAAAAGTAGCTTTCTTA
GTACTTTATGTGGACGATATCCTCCTCATTGGGAATGATGTGGGATACCTTACTGACGTTAAAGCTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTAGGAGAG
GCACAATATGTTCTTGGAATCCAAATCATAAGGGATCGTAAGAACAAAACGCTAGCACTGTCTCAAGCAACCTATATCGACAAAATGTTGGTTCGATATTCGATG
CAGAACTCTAAGAAGGGTTTATTACCTTTCATGCATGTGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCC
TATGCCTCAGCTGTGGGCAGCTTAATGTATGCTATGCTCTGTACTAGGTCAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTATCAGTCCAACCCAGGGTTA
GACCATTGGACGACGGTTAAAATTATTCTCAAGTATCTTATGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGAT
TCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCAGATCAGTGGTCACTCTAA

mRNA sequence

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Protein sequence

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MSKSIRILLSIATFYDYEIWKMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFL
VLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFMHVVHLSKEQCPKTPQEVEDMRRIP
YASAVGSLMYAMLCTRSDICYAVGIVSRYQSNPGLDHWTTVKIILKYLMRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSDQWSL

Cmc06g0165691 (gene) of Melon (Charmono) v1.1 genome