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Cmc06g0165761 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0165761
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:17741310..17741801
RNA-Seq ExpressionCmc06g0165761
SyntenyCmc06g0165761
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process)
GO:0000502 - proteasome complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025848.1 pol protein [Cucumis melo var. makuwa]1.3e-7699.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

KAA0031437.1 pol protein [Cucumis melo var. makuwa]1.3e-7699.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

KAA0033825.1 pol protein [Cucumis melo var. makuwa]1.3e-7699.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

TYK20443.1 pol protein [Cucumis melo var. makuwa]1.3e-7699.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

TYK28422.1 pol protein [Cucumis melo var. makuwa]1.3e-7699.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TEQ2 Reverse transcriptase6.4e-7799.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

A0A5A7TSL0 Reverse transcriptase6.4e-7799.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

A0A5A7UBS1 Reverse transcriptase6.4e-7799.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

A0A5D3CQB5 Reverse transcriptase6.4e-7799.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

A0A5D3DY07 Reverse transcriptase6.4e-7799.32Show/hide
Query:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein5.9e-1130.23Show/hide
Query:  MREPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRL
        ++EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+
Subjt:  MREPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRL

Query:  CIDYRELNKVTVKNRYPLPRIDDLFDQLQ
         +DY+ LNK    N YPLP I+ L  ++Q
Subjt:  CIDYRELNKVTVKNRYPLPRIDDLFDQLQ

P10394 Retrovirus-related Pol polyprotein from transposon 4122.2e-1332.58Show/hide
Query:  REYPDVFPDELPGLPPPREVDFAIELEPGTA--------------PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG------
        + +P++F  +L  +       FA+E EP T               P+    YR   ++++E++ Q+Q+L+    + PSVS + +P+L V KK        
Subjt:  REYPDVFPDELPGLPPPREVDFAIELEPGTA--------------PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG------

Query:  SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
          RL IDYR++NK  + +++PLPRIDD+ DQL
Subjt:  SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.5e-1833.96Show/hide
Query:  KASKLLSQGTWGILASVVDMREPEVSLSSEP---------VVREYPDVFPDELPGLPPPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ
        +AS L   G +  + S +   EP  +  S           + ++Y ++  ++LP  P P +++       IE++PG       PY +     +E+   +Q
Subjt:  KASKLLSQGTWGILASVVDMREPEVSLSSEP---------VVREYPDVFPDELPGLPPPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ

Query:  ELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
        +LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++
Subjt:  ELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.5e-1833.96Show/hide
Query:  KASKLLSQGTWGILASVVDMREPEVSLSSEP---------VVREYPDVFPDELPGLPPPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ
        +AS L   G +  + S +   EP  +  S           + ++Y ++  ++LP  P P +++       IE++PG       PY +     +E+   +Q
Subjt:  KASKLLSQGTWGILASVVDMREPEVSLSSEP---------VVREYPDVFPDELPGLPPPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ

Query:  ELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
        +LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++
Subjt:  ELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL

Q9UR07 Transposon Tf2-11 polyprotein5.9e-1130.23Show/hide
Query:  MREPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRL
        ++EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+
Subjt:  MREPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRL

Query:  CIDYRELNKVTVKNRYPLPRIDDLFDQLQ
         +DY+ LNK    N YPLP I+ L  ++Q
Subjt:  CIDYRELNKVTVKNRYPLPRIDDLFDQLQ

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein9.3e-0454.55Show/hide
Query:  LKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG
        LK  L E+L+   I+PS+SP+ +PVL V+KKDG
Subjt:  LKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCTAGTAAACTACTCAGCCAGGGAACTTGGGGCATCTTGGCAAGCGTAGTGGATATGAGAGAGCCAGAAGTTTCCCTATCTTCTGAACCAGTGGTGAGGGAGTA
CCCCGACGTTTTTCCAGACGAACTCCCAGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCCATCGAGTTAGAGCCGGGCACTGCCCCCATCTCGAGGGCGCCGTACAGAA
TGGCTCCAGCCGAGCTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGTTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCCCCAGTATTGTTCGTAAAG
AAGAAGGATGGGTCAATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAATTGCA
GGAGCCACCGTCTTCTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCTAGTAAACTACTCAGCCAGGGAACTTGGGGCATCTTGGCAAGCGTAGTGGATATGAGAGAGCCAGAAGTTTCCCTATCTTCTGAACCAGTGGTGAGGGAGTA
CCCCGACGTTTTTCCAGACGAACTCCCAGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCCATCGAGTTAGAGCCGGGCACTGCCCCCATCTCGAGGGCGCCGTACAGAA
TGGCTCCAGCCGAGCTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGTTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCCCCAGTATTGTTCGTAAAG
AAGAAGGATGGGTCAATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAATTGCA
GGAGCCACCGTCTTCTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGA
Protein sequenceShow/hide protein sequence
MKASKLLSQGTWGILASVVDMREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQEPPSSPRSTCDQAITS