CuGenDBv2

Gene ID	Cmc06g0165861
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	zinc finger BED domain-containing protein RICESLEEPER 2-like
Genome location	CMiso1.1chr06:17903150..17903503
RNA-Seq Expression	Cmc06g0165861
Synteny	Cmc06g0165861
Gene Ontology terms	GO:0009791 - post-embryonic development (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ACX85638.1 putative transposase [Cucumis melo]

3.2e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

KAA0026183.1 putative transposase [Cucumis melo var. makuwa]

3.2e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

TYK24202.1 putative transposase [Cucumis melo var. makuwa]

3.2e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

TYK27167.1 putative transposase [Cucumis melo var. makuwa]

3.2e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

TYK30776.1 putative transposase [Cucumis melo var. makuwa]

3.2e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SNJ1 Putative transposase

1.5e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

A0A5A7U1Q3 Putative transposase

1.5e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

A0A5D3C2L4 Putative transposase

1.5e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

A0A5D3D570 Putative transposase

1.5e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

A0A5D3E590 Putative transposase

1.5e-48

76.52

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--
        M+IT HFIDDDWNLHKRILNF Q+A HKGDTIGRAIEK LE WG DRLFTVT+DNASSN++ IAYLVK F+G+NGLVLDGEFIH+RCCAHILNLIVSD  
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWG-DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD--

Query:  ------------VVKYVRSSPARLQIFKDFAK
                     VKYVRSSPARLQIFKDFAK
Subjt:  ------------VVKYVRSSPARLQIFKDFAK

SwissProt top hits

e value

%identity

Alignment

B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 1

2.2e-15

35.94

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Query:  FIDDDWNLHKRILNFYQIAY-HKGDTIGRAIEKSLETWG--DRLFTVTIDN-ASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSDV----
        FID +W +H+R+LNF  ++  H  + +  AI  SL  W   D+LFT+T+DN  SS+++  A L      KN L+L G+   VRC AHILN +  DV    
Subjt:  FIDDDWNLHKRILNFYQIAY-HKGDTIGRAIEKSLETWG--DRLFTVTIDN-ASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSDV----

Query:  ----------VKYVRSSPARLQIFKDFA
                  +K++++SP+  + F + A
Subjt:  ----------VKYVRSSPARLQIFKDFA

P03010 Putative AC9 transposase

8.2e-15

37.62

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Query:  MIITVHFIDDDWNLHKRILNFYQI-AYHKGDTIGRAIEKSLETWG--DRLFTVTIDNASSNNLGIAYLVKMFRG-KNGLVLDGEFIHVRCCAHILNLIVS
        M +T+H+IDDDW L KRI+ F+ +   H G  + +     +  W    +LF +++DNAS+N + +  +++  +   + LV DG F HVRC  HILNL+  
Subjt:  MIITVHFIDDDWNLHKRILNFYQI-AYHKGDTIGRAIEKSLETWG--DRLFTVTIDNASSNNLGIAYLVKMFRG-KNGLVLDGEFIHVRCCAHILNLIVS

Query:  D
        D
Subjt:  D

P08770 Putative AC transposase

8.2e-15

37.62

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Query:  MIITVHFIDDDWNLHKRILNFYQI-AYHKGDTIGRAIEKSLETWG--DRLFTVTIDNASSNNLGIAYLVKMFRG-KNGLVLDGEFIHVRCCAHILNLIVS
        M +T+H+IDDDW L KRI+ F+ +   H G  + +     +  W    +LF +++DNAS+N + +  +++  +   + LV DG F HVRC  HILNL+  
Subjt:  MIITVHFIDDDWNLHKRILNFYQI-AYHKGDTIGRAIEKSLETWG--DRLFTVTIDNASSNNLGIAYLVKMFRG-KNGLVLDGEFIHVRCCAHILNLIVS

Query:  D
        D
Subjt:  D

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 2

2.6e-16

36.72

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Query:  FIDDDWNLHKRILNFYQIAY-HKGDTIGRAIEKSLETWG--DRLFTVTIDN-ASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSDV----
        FID +W +H+R+LNF  ++  H  + +  AI  SL  W   D+LFT+T+DN  SS+++  A L      KN L+L G+   VRC AHILN +  DV    
Subjt:  FIDDDWNLHKRILNFYQIAY-HKGDTIGRAIEKSLETWG--DRLFTVTIDN-ASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSDV----

Query:  ----------VKYVRSSPARLQIFKDFA
                  +K++++SP+R + F + A
Subjt:  ----------VKYVRSSPARLQIFKDFA

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 3

5.9e-13

35.51

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Query:  ITVHFIDDDWNLHKRILNFYQIAY-HKGDTIGRAIEKSLETWG--DRLFTVTIDN-ASSNNLGIAYLVK-MFRGKNGLVLDGEFIHVRCCAHILNLIVSD
        +   FID +W +H+R++NF  ++  H  +++  AI  SL  W   D+LFT+T+DN  SS+++  A ++  +   K+ +++ G+   VRC AHILN +  D
Subjt:  ITVHFIDDDWNLHKRILNFYQIAY-HKGDTIGRAIEKSLETWG--DRLFTVTIDN-ASSNNLGIAYLVK-MFRGKNGLVLDGEFIHVRCCAHILNLIVSD

Query:  VVKYVRS
        V+  V S
Subjt:  VVKYVRS

Arabidopsis top hits

e value

%identity

Alignment

AT3G42170.1 BED zinc finger ;hAT family dimerisation domain

2.0e-08

29.13

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Query:  MIITVHFIDDDWNLHKRILNFYQIAYHKGD-TIGRAIEKSLETWG--DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD
        + IT H+ID DW + K++LN    +Y + D  +  A+   +  WG   +LF VT ++ +SN+  +  +      KN  +LDG+ +   C A     +  D
Subjt:  MIITVHFIDDDWNLHKRILNFYQIAYHKGD-TIGRAIEKSLETWG--DRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSD

Query:  VVK
        V++
Subjt:  VVK

Sequences

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CDS sequence

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ATGATTATAACGGTTCATTTCATTGATGATGATTGGAACTTGCACAAAAGAATTTTGAACTTTTATCAAATAGCTTACCATAAAGGAGATACAATAGGTAGAGCTATTGA
AAAGAGTTTAGAAACTTGGGGTGATAGGCTCTTTACTGTAACAATTGATAATGCAAGTTCAAATAATTTAGGCATTGCATATTTAGTTAAAATGTTTAGAGGCAAAAATG
GGTTGGTGTTGGATGGTGAATTTATTCACGTTAGATGTTGTGCTCATATCCTTAATTTAATTGTTAGTGATGTTGTGAAGTATGTTAGGTCATCTCCTGCAAGACTGCAA
ATATTTAAAGACTTTGCTAAATAA

mRNA sequence

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Protein sequence

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MIITVHFIDDDWNLHKRILNFYQIAYHKGDTIGRAIEKSLETWGDRLFTVTIDNASSNNLGIAYLVKMFRGKNGLVLDGEFIHVRCCAHILNLIVSDVVKYVRSSPARLQ
IFKDFAK

Cmc06g0165861 (gene) of Melon (Charmono) v1.1 genome