; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0165931 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0165931
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:18011216..18012195
RNA-Seq ExpressionCmc06g0165931
SyntenyCmc06g0165931
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041424.1 pol protein [Cucumis melo var. makuwa]3.7e-15791.15Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFITGL RTLR FTVIWVV+DRLTKSAHF+PGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ A  TRLDFS AF+PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SW+SHLHLMEFAYNN++QATIGMAPFEALYGKCCRSP+ WDEVGEQRLMGPELVQSTNEA+QKIRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR

Query:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE
        RKDLEF VG+KVFLKVAPMKGVLRFERRGKLSP FVGPFEILER+  VAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVD EPLEIDENLSY EQ VE
Subjt:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE

Query:  VFARE
        V ARE
Subjt:  VFARE

KAA0043401.1 pol protein [Cucumis melo var. makuwa]4.9e-15790.82Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFITGL RTLR FTVIWVV+DRLTKSAHF+PGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ A  TRLDFS AF+PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SW+SHLHLMEFAYNN++QATIGMAPFEALYG+CCRSP+ W EVGEQRLMGPELVQSTNEAIQKIRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR

Query:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE
        RKDLEF +G+KVFLKVAPMKGVLRFERRGKLSP FVGPFEILERI  VAYRLALPPSLSAVHDVFH+SMLRKYVPDPSHVVDYEPLEIDENLSY EQ VE
Subjt:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE

Query:  VFARE
        V ARE
Subjt:  VFARE

KAA0043669.1 pol protein [Cucumis melo var. makuwa]4.9e-15790.82Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFITGL RTLR FTVIWVV+DRLTKSAHF+PGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ A  TRLDFS AF+PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SW+SHLHLMEFAYNN++QATIGMAPFEALYG+CCRSP+ WDEVGEQRLMGPELVQSTNEA+QKIRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR

Query:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE
        RKDLEF VG+KVFLKVAPMKGVLRFERRGKLSP FVGPFEILERI  VAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY E+ VE
Subjt:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE

Query:  VFARE
        V ARE
Subjt:  VFARE

KAA0048435.1 pol protein [Cucumis melo var. makuwa]5.0e-170100Show/hide
Query:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
        GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
Subjt:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL

Query:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
        EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
Subjt:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE

Query:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
        FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
Subjt:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE

TYK28231.1 pol protein [Cucumis melo var. makuwa]5.0e-170100Show/hide
Query:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
        GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
Subjt:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL

Query:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
        EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
Subjt:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE

Query:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
        FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
Subjt:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE

TrEMBL top hitse value%identityAlignment
A0A5A7TDB5 Pol protein1.8e-15791.15Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFITGL RTLR FTVIWVV+DRLTKSAHF+PGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ A  TRLDFS AF+PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SW+SHLHLMEFAYNN++QATIGMAPFEALYGKCCRSP+ WDEVGEQRLMGPELVQSTNEA+QKIRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR

Query:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE
        RKDLEF VG+KVFLKVAPMKGVLRFERRGKLSP FVGPFEILER+  VAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVD EPLEIDENLSY EQ VE
Subjt:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE

Query:  VFARE
        V ARE
Subjt:  VFARE

A0A5A7TPA9 Pol protein2.4e-15790.82Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFITGL RTLR FTVIWVV+DRLTKSAHF+PGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ A  TRLDFS AF+PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SW+SHLHLMEFAYNN++QATIGMAPFEALYG+CCRSP+ W EVGEQRLMGPELVQSTNEAIQKIRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR

Query:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE
        RKDLEF +G+KVFLKVAPMKGVLRFERRGKLSP FVGPFEILERI  VAYRLALPPSLSAVHDVFH+SMLRKYVPDPSHVVDYEPLEIDENLSY EQ VE
Subjt:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE

Query:  VFARE
        V ARE
Subjt:  VFARE

A0A5A7TR61 Pol protein2.4e-15790.82Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFITGL RTLR FTVIWVV+DRLTKSAHF+PGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ A  TRLDFS AF+PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFP SW+SHLHLMEFAYNN++QATIGMAPFEALYG+CCRSP+ WDEVGEQRLMGPELVQSTNEA+QKIRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVR

Query:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE
        RKDLEF VG+KVFLKVAPMKGVLRFERRGKLSP FVGPFEILERI  VAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY E+ VE
Subjt:  RKDLEFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVE

Query:  VFARE
        V ARE
Subjt:  VFARE

A0A5A7U477 Reverse transcriptase2.4e-170100Show/hide
Query:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
        GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
Subjt:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL

Query:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
        EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
Subjt:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE

Query:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
        FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
Subjt:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE

A0A5D3DX79 Reverse transcriptase2.4e-170100Show/hide
Query:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
        GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
Subjt:  GLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL

Query:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
        EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE
Subjt:  EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLE

Query:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
        FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE
Subjt:  FNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFARE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.9e-3432.61Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFIT L  +   +  ++VV+DR +K A  +P   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS+ + PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV
         NQ +E +LR      P++W  H+ L++ +YNN   +   M PFE ++      SP+      ++     E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY
        + +++ EF  G+ V +K     G L   +  KL+P F GPF +L++     Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein1.9e-3432.61Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFIT L  +   +  ++VV+DR +K A  +P   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS+ + PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV
         NQ +E +LR      P++W  H+ L++ +YNN   +   M PFE ++      SP+      ++     E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY
        + +++ EF  G+ V +K     G L   +  KL+P F GPF +L++     Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein1.9e-3432.61Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFIT L  +   +  ++VV+DR +K A  +P   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS+ + PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV
         NQ +E +LR      P++W  H+ L++ +YNN   +   M PFE ++      SP+      ++     E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY
        + +++ EF  G+ V +K     G L   +  KL+P F GPF +L++     Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein1.9e-3432.61Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFIT L  +   +  ++VV+DR +K A  +P   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS+ + PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV
         NQ +E +LR      P++W  H+ L++ +YNN   +   M PFE ++      SP+      ++     E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY
        + +++ EF  G+ V +K     G L   +  KL+P F GPF +L++     Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein1.9e-3432.61Show/hide
Query:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER
        MDFIT L  +   +  ++VV+DR +K A  +P   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS+ + PQTDGQTER
Subjt:  MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTER

Query:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV
         NQ +E +LR      P++W  H+ L++ +YNN   +   M PFE ++      SP+      ++     E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYG-KCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY
        + +++ EF  G+ V +K     G L   +  KL+P F GPF +L++     Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFNVGNKVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAV-HDVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
AT1G42190.1 GAG/POL/ENV polyprotein7.9e-0440Show/hide
Query:  YRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLV
        Y+L LP  + A H VFHVSMLRK +    +V+   P ++ EN+     L+
Subjt:  YRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCATTACAGGACTGTCTAGAACTCTGAGGGATTTTACAGTGATTTGGGTTGTTCTTGACAGGCTTACCAAATCAGCACACTTCATTCCGGGGAAATCC
ACTTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCC
AAGTTCTGGAAGGGTTTACAGGCTGCTACGAGCACGAGGTTAGACTTTAGTATGGCTTTCTACCCACAGACTGATGGTCAGACTGAGCGTCTGAACCAAGTTTTA
GAGGATATGTTGCGAGCTTGTGCATTAGAATTCCCAAGTAGTTGGAATTCCCACTTGCATTTGATGGAATTTGCTTACAATAACAATTTTCAGGCTACCATTGGC
ATGGCACCATTTGAGGCCTTGTATGGCAAATGTTGTAGATCCCCTATTTACTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACT
AACGAAGCGATACAGAAAATTAGATCACGTATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGCTGATGTGAGACGAAAGGATCTTGAGTTTAATGTGGGGAAC
AAAGTGTTCTTGAAAGTAGCACCTATGAAAGGTGTTTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCTCATTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATT
GACCTTGTGGCATATCGCTTGGCGTTGCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTATGTGCCAGATCCATCCCATGTA
GTGGATTACGAGCCATTAGAGATTGATGAAAACTTGAGTTATACAGAACAACTAGTTGAGGTGTTTGCTAGGGAGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCATTACAGGACTGTCTAGAACTCTGAGGGATTTTACAGTGATTTGGGTTGTTCTTGACAGGCTTACCAAATCAGCACACTTCATTCCGGGGAAATCC
ACTTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCC
AAGTTCTGGAAGGGTTTACAGGCTGCTACGAGCACGAGGTTAGACTTTAGTATGGCTTTCTACCCACAGACTGATGGTCAGACTGAGCGTCTGAACCAAGTTTTA
GAGGATATGTTGCGAGCTTGTGCATTAGAATTCCCAAGTAGTTGGAATTCCCACTTGCATTTGATGGAATTTGCTTACAATAACAATTTTCAGGCTACCATTGGC
ATGGCACCATTTGAGGCCTTGTATGGCAAATGTTGTAGATCCCCTATTTACTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACT
AACGAAGCGATACAGAAAATTAGATCACGTATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGCTGATGTGAGACGAAAGGATCTTGAGTTTAATGTGGGGAAC
AAAGTGTTCTTGAAAGTAGCACCTATGAAAGGTGTTTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCTCATTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATT
GACCTTGTGGCATATCGCTTGGCGTTGCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTATGTGCCAGATCCATCCCATGTA
GTGGATTACGAGCCATTAGAGATTGATGAAAACTTGAGTTATACAGAACAACTAGTTGAGGTGTTTGCTAGGGAGGGTTGA
Protein sequenceShow/hide protein sequence
MDFITGLSRTLRDFTVIWVVLDRLTKSAHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAATSTRLDFSMAFYPQTDGQTERLNQVL
EDMLRACALEFPSSWNSHLHLMEFAYNNNFQATIGMAPFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADVRRKDLEFNVGN
KVFLKVAPMKGVLRFERRGKLSPHFVGPFEILERIDLVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVFAREG