CuGenDBv2

Gene ID	Cmc06g0165941
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:18013112..18014134
RNA-Seq Expression	Cmc06g0165941
Synteny	Cmc06g0165941
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040871.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.5e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTREVDVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPY+M  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLR+VL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.5e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTREVDVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLR+VL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

3.5e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTRE DVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLRMVL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

KAA0062719.1 pol protein [Cucumis melo var. makuwa]

4.6e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTR+ DVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLRMVL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+TSW RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

TYK01613.1 pol protein [Cucumis melo var. makuwa]

3.5e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTRE DVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLRMVL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGS7 Reverse transcriptase

1.7e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTREVDVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPY+M  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLR+VL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

A0A5A7TV57 Ty3-gypsy retrotransposon protein

1.7e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTREVDVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLR+VL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

A0A5A7U330 Reverse transcriptase

1.7e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTRE DVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLRMVL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

A0A5A7VAL8 Pol protein

2.2e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTR+ DVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLRMVL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+TSW RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

A0A5D3BPI1 Reverse transcriptase

1.7e-161

87.65

Show/hide

Query:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS
        +RASKLLS+GTW ILASVVDTRE DVSLSSEPVVRDYPDVF EELPGLPP+RE+EFAIELEPGTVPISRAPYRM  AELKELKVQLQELLDKGFIRPSVS
Subjt:  MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP IDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPK AF SRYGHYEFIVM FGLTNA AVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFM

Query:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL
        DLMN VFREFLDTFVI+FIDDILIYSKTEAEHEEHLRMVL+TLR NK              VSFLGHVVSKA VSVDPAKIEA+T W RPSTVSEVRSFL
Subjt:  DLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKTLRANK--------------VSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF
        GLAGYYRRFVENFSRIATPL QLTRKGAPFVWSK  EDSF
Subjt:  GLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

8.6e-46

32.76

Show/hide

Query:  EELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDL
        E+LP   P + +EF +EL      +    Y +   +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP+I+ L
Subjt:  EELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDL

Query:  FDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKT
          ++QG+T+F+K+DL+S YH +R++  D  K+AF    G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VL+ 
Subjt:  FDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKT

Query:  LR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKT
        L+               ++V F+G+ +S+   +     I+ +  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+ T
Subjt:  LR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKT

P0CT41 Transposon Tf2-12 polyprotein

8.6e-46

32.76

Show/hide

Query:  EELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDL
        E+LP   P + +EF +EL      +    Y +   +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP+I+ L
Subjt:  EELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPMIDDL

Query:  FDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKT
          ++QG+T+F+K+DL+S YH +R++  D  K+AF    G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VL+ 
Subjt:  FDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHEEHLRMVLKT

Query:  LR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKT
        L+               ++V F+G+ +S+   +     I+ +  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+ T
Subjt:  LR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

3.2e-48

37.98

Show/hide

Query:  YPDVFLEELPGLPP---YREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK
        Y ++   +LP  P       ++  IE++PG       PY +T    +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + 
Subjt:  YPDVFLEELPGLPP---YREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK

Query:  YPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHE
        +PLP ID+L  ++  A +F+ +DL S YHQ+ ++  D  K AF +  G YE+ VM FGL NA + F   M   FR+    FV +++DDILI+S++  EH 
Subjt:  YPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHE

Query:  EHLRMVLKTLR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL
        +HL  VL+ L+              + +  FLG+ +    ++    K  AI  +P P TV + + FLG+  YYRRF+ N S+IA P+
Subjt:  EHLRMVLKTLR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.6e-47

35.23

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Query:  DYPDVFLEELPGLPPYREIEFAIELEPGT---VPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNK
        ++P +F   L G+     +E A++ E  T    PI    Y   +    E++ Q+ ELL  G IRPS SP+ +P+  V KK     +   R+ +D++ LN 
Subjt:  DYPDVFLEELPGLPPYREIEFAIELEPGT---VPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNK

Query:  VTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSK
        VT+ + YP+P I+     L  A  F+ +DL S +HQ+ +K+SD+PK AF +  G YEF+ + FGL NA A+F  +++ + RE +     ++IDDI+++S+
Subjt:  VTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSK

Query:  TEAEHEEHLRMVLKTL-RAN-------------KVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTR
            H ++LR+VL +L +AN             +V FLG++V+   +  DP K+ AI+  P P++V E++ FLG+  YYR+F+++++++A PL  LTR
Subjt:  TEAEHEEHLRMVLKTL-RAN-------------KVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.2e-48

37.98

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Query:  YPDVFLEELPGLPP---YREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK
        Y ++   +LP  P       ++  IE++PG       PY +T    +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + 
Subjt:  YPDVFLEELPGLPP---YREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK

Query:  YPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHE
        +PLP ID+L  ++  A +F+ +DL S YHQ+ ++  D  K AF +  G YE+ VM FGL NA + F   M   FR+    FV +++DDILI+S++  EH 
Subjt:  YPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFIDDILIYSKTEAEHE

Query:  EHLRMVLKTLR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL
        +HL  VL+ L+              + +  FLG+ +    ++    K  AI  +P P TV + + FLG+  YYRRF+ N S+IA P+
Subjt:  EHLRMVLKTLR--------------ANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

4.7e-15

48.57

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Query:  KVSFLG--HVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTRKGA
        ++++LG  H++S   VS DPAK+EA+  WP P   +E+R FLGL GYYRRFV+N+ +I  PL +L +K +
Subjt:  KVSFLG--HVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTRKGA

Sequences

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CDS sequence

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ATGAGGGCCAGTAAACTGCTTAGTCGGGGTACTTGGAGTATCTTAGCGAGTGTGGTGGATACTAGAGAGGTTGACGTGTCCTTGTCATCAGAACCAGTGGTGAGGGATTA
TCCGGATGTCTTTCTTGAAGAACTTCCAGGGTTACCTCCTTACAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCTGGTACGGTTCCTATATCCAGAGCTCCATATAGAA
TGACCCTAGCAGAATTGAAAGAGCTGAAAGTGCAGTTACAGGAGTTGCTTGATAAAGGCTTCATTCGGCCGAGCGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAA
AAGAAGGATGGATCGATGCGCTTATGTATTGACTACAGGGAGTTGAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCATGATCGACGATCTGTTTGACCAGTTACA
GGGAGCTACAGTGTTCTCTAAGATCGACCTTCGATCAGAATATCATCAGCTAAGGATTAAGGATAGCGATGTACCAAAGATAGCCTTTTGTTCCAGATATGGACACTACG
AGTTTATTGTGATGTATTTTGGTTTGACGAATGCTCAGGCTGTGTTCATGGATTTGATGAACATAGTGTTTAGAGAGTTCCTAGATACTTTTGTGATAATGTTTATTGAT
GATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTAAAAACCCTTCGAGCTAATAAAGTATCCTTTCTAGGCCACGTGGTTTCTAA
AGCTGTTGTTTCTGTGGATCCAGCTAAGATAGAGGCAATCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGAC
GGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTATTCAGTTGACCAGGAAGGGAGCTCCATTTGTTTGGAGCAAGACCTATGAGGACAGTTTTTAG

mRNA sequence

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Protein sequence

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MRASKLLSRGTWSILASVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPYREIEFAIELEPGTVPISRAPYRMTLAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
KKDGSMRLCIDYRELNKVTVKNKYPLPMIDDLFDQLQGATVFSKIDLRSEYHQLRIKDSDVPKIAFCSRYGHYEFIVMYFGLTNAQAVFMDLMNIVFREFLDTFVIMFID
DILIYSKTEAEHEEHLRMVLKTLRANKVSFLGHVVSKAVVSVDPAKIEAITSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLIQLTRKGAPFVWSKTYEDSF

Cmc06g0165941 (gene) of Melon (Charmono) v1.1 genome