CuGenDBv2

Gene ID	Cmc06g0165981
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:18082309..18083847
RNA-Seq Expression	Cmc06g0165981
Synteny	Cmc06g0165981
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0000502 - proteasome complex (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR036397 - Ribonuclease H superfamily IPR000477 - Reverse transcriptase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025998.1 pol protein [Cucumis melo var. makuwa]

1.6e-293

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

KAA0062342.1 pol protein [Cucumis melo var. makuwa]

1.6e-293

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

TYK01576.1 pol protein [Cucumis melo var. makuwa]

1.6e-293

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

TYK06888.1 pol protein [Cucumis melo var. makuwa]

1.6e-293

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

TYK20443.1 pol protein [Cucumis melo var. makuwa]

1.6e-293

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIJ5 Reverse transcriptase

7.7e-294

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

A0A5A7V2A0 Reverse transcriptase

7.7e-294

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

A0A5D3BTN0 Reverse transcriptase

7.7e-294

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

A0A5D3C6W3 Reverse transcriptase

7.7e-294

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

A0A5D3DA59 Reverse transcriptase

7.7e-294

99.02

Show/hide

Query:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
        MKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLP PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS
Subjt:  MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
        PWGAPVLFVK KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFM

Query:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
        DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFL

Query:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
        GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT
Subjt:  GLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT

Query:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
        HDLELAAVVFALKIWRHYLYGEKIQIYTD+KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI
Subjt:  HDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEI

Query:  VVSVGEVTAQLA
         VSVGEVTAQLA
Subjt:  VVSVGEVTAQLA

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

3.2e-87

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Query:  VVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFV-KNKDGS----MRLCIDYRELNK
        ++++Y D+   E   L    +    I  +      S+  Y  A  +  E++ Q+Q++L++G IR S SP+ +P+  V K +D S     R+ IDYR+LN+
Subjt:  VVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFV-KNKDGS----MRLCIDYRELNK

Query:  VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSK
        +TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    + KTAF +++GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+++S 
Subjt:  VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSK

Query:  TEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG
        +  EH + L  V E L    L  +  KCEF  ++ TFLGHV++ +G+  +P KIEA+  +  P+   EI++FLGL GYYR+F+ +F+ IA P+T+  +K 
Subjt:  TEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG

Query:  TPF-VWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI
              +P  + +F++LK  +   P+L VPD +  F + +DAS   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +I
Subjt:  TPF-VWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI

Query:  YTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIV
         +D++ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR +      +++QT    + + ++++
Subjt:  YTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIV

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.5e-84

38.04

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Query:  APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKNKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS
        +PI    Y +A     E++ Q+QE+L++G IR S SP+ +P   V  K         R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  
Subjt:  APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKNKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS

Query:  GYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL
        G+HQ+ + +  I KTAF ++ GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +  KCEF  
Subjt:  GYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL

Query:  RKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSPACERSFQELKQKLVTAPVLTVPDG
        ++  FLGH+V+ +G+  +P K++A+ ++  P+   EIR+FLGL GYYR+F+ +++ IA P+T   +K T           +F++LK  ++  P+L +PD 
Subjt:  RKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSPACERSFQELKQKLVTAPVLTVPDG

Query:  SGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDC
           FV+ +DAS   LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL G +  I +D++ L++    KE   +  RW   + +Y  
Subjt:  SGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDC

Query:  EILYHPGKANVVADALSR
        +I Y  GK N VADALSR
Subjt:  EILYHPGKANVVADALSR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.4e-82

35.61

Show/hide

Query:  KASKLLSQGTWGILASVVDIREPEVSLSSEP---------VVREYPDVFPDELPGLPLPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ
        +AS L   G +  + S +   EP  +  S           + ++Y ++  ++LP  P P +++       IE++PG       PY +     +E+   +Q
Subjt:  KASKLLSQGTWGILASVVDIREPEVSLSSEP---------VVREYPDVFPDELPGLPLPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ

Query:  ELLDKGFIRPSVSPWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV
        +LLD  FI PS SP  +PV+ V  KDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF +  G YE+ V
Subjt:  ELLDKGFIRPSVSPWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW
        M FGL NAP+ F   M   F+D    FV V++DDILI+S++  EH +HL  VLE L+   L  K  KC+F   +  FLG+ +  + ++    K  A+ ++
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW

Query:  TRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----
          P TV + + FLG+  YYRRF+ + S+IA P+       +   W+   +++ ++LK  L  +PVL   +   N+ + +DASK G+G VL +        
Subjt:  TRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----

Query:  -VVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
         VV Y S+ L+  ++NYP  +LEL  ++ AL  +R+ L+G+   + TD+ SL     + E   R +RWL+ +  YD  + Y  G  NVVADA+SR +
Subjt:  -VVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

6.2e-83

35.27

Show/hide

Query:  EYPDVFPDELPGLPLPREVDFAIELEPGT---APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKNK-----DGSMRLCIDYRELNK
        E+P +F   L G+     V+ A++ E  T    PI    Y        E++ Q+ ELL  G IRPS SP+ +P+  V  K     +   R+ +D++ LN 
Subjt:  EYPDVFPDELPGLPLPREVDFAIELEPGT---APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKNK-----DGSMRLCIDYRELNK

Query:  VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSK
        VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +++ DIPKTAF +  G YEF+ + FGL NAPA+F  +++ + ++ +     V+IDDI+++S+
Subjt:  VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSK

Query:  TEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTR--
            H ++L  VL +L    L     K  F   +V FLG++V+++G+  DP K+ A++    P++V E++ FLG+  YYR+F++D++++A PLT LTR  
Subjt:  TEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTR--

Query:  ---------KGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ----QGKVVAYASRQLKIHEQNYPTHDLELAAVVFAL
                    P        +SF +LK  L ++ +L  P  +  F + +DAS   +G VL Q    + + +AY SR L   E+NY T + E+ A++++L
Subjt:  ---------KGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ----QGKVVAYASRQLKIHEQNYPTHDLELAAVVFAL

Query:  KIWRHYLYGE-KIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
           R YLYG   I++YTD++ L +    +  N + +RW   +++Y+CE++Y PGK+NVVADALSR
Subjt:  KIWRHYLYGE-KIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.4e-82

35.81

Show/hide

Query:  KASKLLSQGTWGILASVVDIREPEVSLSSEP---------VVREYPDVFPDELPGLPLPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ
        +AS L   G +  + S +   EP  +  S           + ++Y ++  ++LP  P P +++       IE++PG       PY +     +E+   +Q
Subjt:  KASKLLSQGTWGILASVVDIREPEVSLSSEP---------VVREYPDVFPDELPGLPLPREVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQ

Query:  ELLDKGFIRPSVSPWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV
        +LLD  FI PS SP  +PV+ V  KDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF +  G YE+ V
Subjt:  ELLDKGFIRPSVSPWGAPVLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW
        M FGL NAP+ F   M   F+D    FV V++DDILI+S++  EH +HL  VLE L+   L  K  KC+F   +  FLG+ +  + ++    K  A+ ++
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW

Query:  TRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----
          P TV + + FLG+  YYRRF+ + S+IA P+       +   W+   +++  +LK  L  +PVL   +   N+ + +DASK G+G VL +        
Subjt:  TRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGK-----

Query:  -VVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
         VV Y S+ L+  ++NYP  +LEL  ++ AL  +R+ L+G+   + TD+ SL     + E   R +RWL+ +  YD  + Y  G  NVVADA+SR V
Subjt:  -VVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

7.2e-26

43.2

Show/hide

Query:  HLHQVLETLRANKLYAKFSKCEFWLRKVTFLG--HVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW
        HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  W  P   +E+R FLGL GYYRRFV+++ +I  PLT+L +K +   W
Subjt:  HLHQVLETLRANKLYAKFSKCEFWLRKVTFLG--HVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW

Query:  SPACERSFQELKQKLVTAPVLTVPD
        +     +F+ LK  + T PVL +PD
Subjt:  SPACERSFQELKQKLVTAPVLTVPD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGGCTAGTAAACTACTCAGCCAGGGAACTTGGGGCATCTTGGCAAGCGTAGTGGATATTAGAGAGCCAGAAGTTTCCCTATCGTCTGAACCAGTGGTGAGG
GAGTACCCCGACGTTTTCCCAGACGAACTCCCAGGACTTCCGCTTCCCAGAGAAGTAGACTTCGCCATCGAGTTAGAGCCGGGCACTGCCCCTATCTCGAGGGCC
CCTTACAGAATGGCTCCAGCCGAGCTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCACCTTGGGGAGCCCCA
GTATTGTTCGTGAAGAACAAGGATGGGTCGATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTACCCCTTGCCCAGGATTGAT
GACCTGTTCGATCAGTTGCAGGGAGCCACCGTCTTTTCCAAGATCGACCTGCGATCGGGCTATCACCAGTTGAGGATTAGGGACGGTGACATTCCCAAGACGGCC
TTTCGGTCGAGGTACGGACACTACGAATTCGTTGTGATGTCCTTCGGCTTGACTAACGCTCCTGCAGTATTCATGGATTTGATGAACAGGGTGTTTAAGGACTTT
CTAGACTCGTTCGTCATAGTCTTCATTGACGACATCCTCATTTACTCAAAAACTGAGGCGGAGCACGAGGAGCACTTACACCAGGTTTTGGAGACCCTTCGAGCC
AACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAGGAAGGTGACGTTTCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCAGTAGATCCCGCAAAG
ATTGAAGCGGTGACCAACTGGACTCGACCGTCCACGGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGT
ATAGCCAGCCCGTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAGCATGCGAGCGTAGCTTTCAGGAGCTCAAACAGAAGCTAGTGACTGCA
CCAGTCCTGACAGTGCCCGATGGTTCGGGAAACTTTGTGATCTATAGTGATGCCTCCAAGAAGGGACTGGGCTGTGTCCTGATGCAGCAAGGTAAGGTAGTTGCT
TATGCCTCCCGCCAGTTGAAGATTCATGAACAGAACTACCCTACCCACGACTTGGAGTTGGCAGCCGTAGTCTTTGCACTGAAGATATGGAGGCACTATCTGTAC
GGTGAGAAGATTCAGATTTACACCGACTATAAGAGCCTGAAGTACTTCTTCACTCAGAAGGAGTTAAACATGAGGCAGAGGAGGTGGCTCGAGTTGGTGAAAGAC
TACGACTGCGAGATCCTGTACCACCCAGGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGGAAGGTTGCACATTCAGCAGCGCTAATCACCAAGCAGACCCCC
TTACTCAGGGATTTTGAGAGAGCCGAGATTGTAGTCTCAGTAGGTGAGGTTACCGCACAGTTGGCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAP
VLFVKNKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDF
LDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSR
IASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLY
GEKIQIYTDYKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIVVSVGEVTAQLA

Cmc06g0165981 (gene) of Melon (Charmono) v1.1 genome