CuGenDBv2

Gene ID	Cmc06g0166251
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:18614550..18615197
RNA-Seq Expression	Cmc06g0166251
Synteny	Cmc06g0166251
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0054634.1 pol protein [Cucumis melo var. makuwa]

1.8e-105

92.02

Show/hide

Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDPAKIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSG+FVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLK HEQNYPT
Subjt:  SSQLKSHEQNYPT

KAA0063946.1 pol protein [Cucumis melo var. makuwa]

1.0e-105

92.49

Show/hide

Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDPAKIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSR ASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSGSFVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLKSHEQNYPT
Subjt:  SSQLKSHEQNYPT

KAA0066951.1 pol protein [Cucumis melo var. makuwa]

1.8e-105

92.02

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDPAKIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSG+FVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLK HEQNYPT
Subjt:  SSQLKSHEQNYPT

TYK05193.1 pol protein [Cucumis melo var. makuwa]

1.0e-105

92.02

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDP KIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSG+FVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLKSHEQNYPT
Subjt:  SSQLKSHEQNYPT

TYK18480.1 pol protein [Cucumis melo var. makuwa]

2.3e-105

92.02

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDP KIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSGSFVIYSDA KKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLKSHEQNYPT
Subjt:  SSQLKSHEQNYPT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UHL7 Reverse transcriptase

8.7e-106

92.02

Show/hide

Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDPAKIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSG+FVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLK HEQNYPT
Subjt:  SSQLKSHEQNYPT

A0A5A7VBY3 Reverse transcriptase

5.1e-106

92.49

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDPAKIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSR ASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSGSFVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLKSHEQNYPT
Subjt:  SSQLKSHEQNYPT

A0A5A7VMR4 Reverse transcriptase

8.7e-106

92.02

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDPAKIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSG+FVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLK HEQNYPT
Subjt:  SSQLKSHEQNYPT

A0A5D3BZN1 Reverse transcriptase

5.1e-106

92.02

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDP KIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSG+FVIYSDASKKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLKSHEQNYPT
Subjt:  SSQLKSHEQNYPT

A0A5D3D4M7 Pol protein

1.1e-105

92.02

Show/hide

Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        MSFGLTNAPAVFMDLMNR+FKDFLDSFVIVFIDDILIYS+TEAEHEEHLHQVLE LRAN+LYAKFSKCEF L+KV+FLGHVVSSEG+SVDP KIEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA
        PRPSTVSEI SFLGLAGYYRRFVEDFSRIASPLTQLTRK TPFVWSPACESSFQELKQKLVTAPVL V DGSGSFVIYSDA KKGLGCV+MQQGKVV+YA
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYA

Query:  SSQLKSHEQNYPT
        S QLKSHEQNYPT
Subjt:  SSQLKSHEQNYPT

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

8.0e-40

40.19

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L  +  KCEFL ++ +FLGHV++ +G+  +P KIEA+  +
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPF-VWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSY
        P P+   EI +FLGL GYYR+F+ +F+ IA P+T+  +K       +P  +S+F++LK  +   P+L V D +  F + +DAS   LG V+ Q G  +SY
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPF-VWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSY

Query:  ASSQLKSHEQNYPT
         S  L  HE NY T
Subjt:  ASSQLKSHEQNYPT

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

5.5e-33

32.89

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        + FGL NA ++F   ++ + ++ +     V++DD++I+SE E++H  H+  VL+ L    +     K  F  + V +LG +VS +G   DP K++A+  +
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KRTPFVWSPACESSFQELKQKLVTAPVLIVL-DGSGSFVIYSDASKKGLGC
        P P  V ++ SFLGLA YYR F++DF+ IA P+T + +           K+ P  ++    ++FQ L+  L +  V++   D    F + +DAS  G+G 
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KRTPFVWSPACESSFQELKQKLVTAPVLIVL-DGSGSFVIYSDASKKGLGC

Query:  VMMQQGKVVSYASSQLKSHEQNYPT
        V+ Q+G+ ++  S  LK  EQNY T
Subjt:  VMMQQGKVVSYASSQLKSHEQNYPT

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.6e-38

38.21

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        M FGL NAPA F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +  KCEFL K+ +FLGH+V+ +G+  +P K++A+ ++
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPF-VWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSY
        P P+   EI +FLGL GYYR+F+ +++ IA P+T   +KRT           +F++LK  ++  P+L + D    FV+ +DAS   LG V+ Q G  +S+
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPF-VWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSY

Query:  ASSQLKSHEQNY
         S  L  HE NY
Subjt:  ASSQLKSHEQNY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.7e-32

35.78

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        M FGL NAP+ F   M   F+D    FV V++DDILI+SE+  EH +HL  VLE L+   L  K  KC+F  ++  FLG+ +  + ++    K  A+ ++
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGK-----
        P P TV +   FLG+  YYRRF+ + S+IA P+      ++   W+   + + ++LK  L  +PVL+  +   ++ + +DASK G+G V+ +        
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGK-----

Query:  -VVSYASSQLKSHEQNYP
         VV Y S  L+S ++NYP
Subjt:  -VVSYASSQLKSHEQNYP

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.2e-32

32.46

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Query:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW
        + FGL NAPA+F  +++ + ++ +     V+IDDI+++SE    H ++L  VL +L    L     K  FL  +V FLG++V+++G+  DP K+ A++  
Subjt:  MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNW

Query:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCV
        P P++V E+  FLG+  YYR+F++D++++A PLT LTR            + P         SF +LK  L ++ +L     +  F + +DAS   +G V
Subjt:  PRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCV

Query:  MMQ----QGKVVSYASSQLKSHEQNYPT
        + Q    + + ++Y S  L   E+NY T
Subjt:  MMQ----QGKVVSYASSQLKSHEQNYPT

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.2e-24

41.22

Show/hide

Query:  HLHQVLENLRANRLYAKFSKCEFLLKKVSFLG--HVVSSEGLSVDPAKIEAVTNWPRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVW
        HL  VL+    ++ YA   KC F   ++++LG  H++S EG+S DPAK+EA+  WP P   +E+  FLGL GYYRRFV+++ +I  PLT+L +K +   W
Subjt:  HLHQVLENLRANRLYAKFSKCEFLLKKVSFLG--HVVSSEGLSVDPAKIEAVTNWPRPSTVSEIHSFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVW

Query:  SPACESSFQELKQKLVTAPVLIVLDGSGSFV
        +     +F+ LK  + T PVL + D    FV
Subjt:  SPACESSFQELKQKLVTAPVLIVLDGSGSFV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAATAGGATGTTTAAGGACTTCTTAGACTCGTTCGTCATAGTTTTCATTGACGACATTTTGAT
TTACTCCGAAACTGAGGCTGAGCATGAAGAGCATTTGCACCAGGTTTTGGAGAATCTTCGAGCCAATAGGCTGTATGCCAAGTTCTCCAAGTGTGAGTTCTTGCTGAAGA
AGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGACTTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAATTGGCCTCGACCGTCTACGGTTAGCGAGATTCAT
AGTTTCCTGGGTTTAGCAGGTTACTATAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGAGGACTCCTTTTGTTTGGAGCCC
AGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTTGTGACTGCACCAGTCCTCATAGTGCTCGATGGGTCAGGAAGTTTTGTGATCTACAGTGATGCCTCCAAAA
AGGGACTGGGCTGTGTTATGATGCAACAAGGTAAGGTAGTTTCTTATGCCTCCAGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACGAAGTTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSFGLTNAPAVFMDLMNRMFKDFLDSFVIVFIDDILIYSETEAEHEEHLHQVLENLRANRLYAKFSKCEFLLKKVSFLGHVVSSEGLSVDPAKIEAVTNWPRPSTVSEIH
SFLGLAGYYRRFVEDFSRIASPLTQLTRKRTPFVWSPACESSFQELKQKLVTAPVLIVLDGSGSFVIYSDASKKGLGCVMMQQGKVVSYASSQLKSHEQNYPTKF

Cmc06g0166251 (gene) of Melon (Charmono) v1.1 genome