CuGenDBv2

Gene ID	Cmc06g0166401
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II CP47 reaction center protein
Genome location	CMiso1.1chr06:18754146..18754846
RNA-Seq Expression	Cmc06g0166401
Synteny	Cmc06g0166401
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ALO21850.1 PsbB [Cucurbita argyrosperma subsp. sororia]

1.3e-111

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

YP_009674417.1 photosystem II 47 kDa protein [Siraitia grosvenorii]

1.3e-111

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

YP_009751764.1 photosystem II 47 kDa protein [Herpetospermum pedunculosum]

1.3e-111

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

YP_009752522.1 photosystem II 47 kDa protein [Trichosanthes tubiflora]

1.3e-111

90.05

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Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

YP_009752607.1 photosystem II 47 kDa protein [Trichosanthes homophylla]

1.3e-111

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE33 Photosystem II CP47 reaction center protein

6.3e-112

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

A0A1S4EU40 Photosystem II CP47 reaction center protein

6.3e-112

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

A0A249RZY7 Photosystem II CP47 reaction center protein

6.3e-112

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

A0A6H0ERV3 Photosystem II CP47 reaction center protein

6.3e-112

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

G3ETS3 Photosystem II CP47 reaction center protein

6.3e-112

90.05

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

SwissProt top hits

e value

%identity

Alignment

A7Y3H4 Photosystem II CP47 reaction center protein

9.3e-113

88.24

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGT+TNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

Q09WZ1 Photosystem II CP47 reaction center protein

3.2e-113

88.69

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRL+SVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

Q0ZIZ3 Photosystem II CP47 reaction center protein

7.1e-113

88.24

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRL+SVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ+VNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

Q2QD63 Photosystem II CP47 reaction center protein

3.8e-114

89.59

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        I+FSGL FL  +                 +PSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

Q49KX2 Photosystem II CP47 reaction center protein

1.6e-112

88.24

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

1.5e-12

26.61

Show/hide

Query:  GLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG--------------WSITGGTITN
        G  W+  +  ++N  G+LL  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG     GG                I+   +  
Subjt:  GLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG--------------WSITGGTITN

Query:  PGIWSYEGVAGAHIVFSGLIFLMNVQEPSLDLPKIFGIHLFLSGLGCF--GFGAFHVTGLY---GPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGG-
         GI  Y  + G   +     F   V +    +  I GIHL L G+G F   F A +  G+Y    PG    D   +T    + +  +G     PF   G 
Subjt:  PGIWSYEGVAGAHIVFSGLIFLMNVQEPSLDLPKIFGIHLFLSGLGCF--GFGAFHVTGLY---GPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGG-

Query:  ---------IASHHIAAGTLGILAGLFHLSVRP
                 I   H+  G++ I  G++H+  +P
Subjt:  ---------IASHHIAAGTLGILAGLFHLSVRP

ATCG00680.1 photosystem II reaction center protein B

9.6e-113

86.88

Show/hide

Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
        MGLPWYRVHTVVLNDPGRLL+VHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW+ITGGTITNPG+WSYEGVAGAH
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH

Query:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS
        IVFSGL FL  +                 +PSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIAS
Subjt:  IVFSGLIFLMNV----------------QEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIAS

Query:  HHIAAGTLGILAGLFHLSVRP
        HHIAAGTLGILAGLFHLSVRP
Subjt:  HHIAAGTLGILAGLFHLSVRP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTTTGCCTTGGTATCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAAT
GGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAGGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATT
CATGGGGGGGTTGGAGTATCACAGGAGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGAGCACATATTGTGTTTTCTGGATTAATATTTTTGATG
AACGTACAGGAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGG
TCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCCGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCT
CGCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCTCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAHIVFSGLIFLM
NVQEPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPLPTSIQRITYGKY

Cmc06g0166401 (gene) of Melon (Charmono) v1.1 genome