; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0166471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0166471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase domain-containing protein
Genome locationCMiso1.1chr06:18851591..18852876
RNA-Seq ExpressionCmc06g0166471
SyntenyCmc06g0166471
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]8.3e-11759.85Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSF+FH RC KVKLTHLTFADDLMIFCAAD+ S+SFIRE LQKFGE SGLFAN RKSSIFV G +NE ASHLAA +G      P  
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
                  L   DCAPLIQRITSRIRSW  RVLSFAGRLQLVRSVLRSLQVYWASVFVLPA VHNEVDKILRSYLWRGKEEGRGG+KVAWV+VCLP E
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
        EGGL IRDGPSWNIA+TLKI   LLT+  SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  -----------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCIL
                                           GGFSIASAWE I PRGG+VLW GLLWGGGNIPKHSFC WLAIKDRL TRDRLHRWDSSI +SCIL
Subjt:  -----------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCIL

Query:  C
        C
Subjt:  C

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]6.8e-12763.92Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSFQFH RC KVKLT+LTFADDLMIFCAAD+PS+ FIRE LQKFGELSGLFAN RKSSIFVAG +NE ASHLAA MGFV GNLP+R
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLL G+L  ND APLIQRITSRIRSW  RVLSFAGRLQLVR VLRSLQVYWASVFVLPA VH+EVDKIL SYLWRGKEEGRGG+KVAWV+VCLP E
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
        E GL IRDGPSWNIASTLKIL L+LT+S SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  ------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHR-WDS
                                      GGFSIASAWE +RPRGGQVLW GLLWGGGNIPK+SFC WLAIKDRL TRDRLHR W+S
Subjt:  ------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHR-WDS

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]2.3e-12759.02Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSF FH RC KVKLTHLTFADDLMIFCAA++PS+ FIRE LQKFGELSGLFAN RKSSIFVAG +NE ASHLA  MGFV GNL VR
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLL G+L  ND APLIQRITSRIRSW  RVLSFAGRLQLV SVLRS QVYWASVFVLPA VHNEVDKILRSYLWRGKEEGRGG+KVAWV+VCLP E
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
        EGGL IRDGPSWNIASTLKILWL+LT+S SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  --------------------------------------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCV
                                                                      GGFSIASAWE +RPRGG+VLW GLLWGGGNI KH FC 
Subjt:  --------------------------------------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCV

Query:  WLAIKDRLATRDRLHRWDSSISMSCIL
        WLAIKDRL T DRLHRWDSS+ M CIL
Subjt:  WLAIKDRLATRDRLHRWDSSISMSCIL

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.5e-11559.15Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSFQFH RC KVKLTHLTFADDLMIFCAAD+PS+ FIRE LQKFGELSGLFAN RKS IFVAG +NE AS LAA MGFV GNLPVR
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLLTG+L  NDCAP+IQRITSRIRSWI RVLSFAGRLQLV SVLRSLQVYWASVFVLPA VHNEVDKILRSYLW                      
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
              RDGPSWNIASTLKILWL+LTS  SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  ---------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC
                                         GGFSIASAW+ IRPRGG+VLW GLLWGG NIPKHSFC WLAIKDRL TRDRLHRWDSS+ M CILC
Subjt:  ---------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]1.7e-11756.06Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN PPQ+FQFHQ C KVKLTHLTFADDLMIFCAAD+ S+SFI+E++++FGELSGLFANL KSSIF+ G ++  AS LAA+MGF +G+LPVR
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLL G+L   DC PLIQRITSRIRSW  RVLSFAGRLQLVRSVLRSLQVYWASVF+LP  VH +VDKILRSYLWRGKEEGRGG KVAW EVCLP +
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW--------------------------------------------------GG-------------
        EGGLAIRDG SWNIASTLKILWLLL  S SLWVAW                                                  GG             
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW--------------------------------------------------GG-------------

Query:  ---------------------------------------------------------FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDR
                                                                 FSIASAWETIRP   +V W+GLLW  GNIPKHSF  WLAI+DR
Subjt:  ---------------------------------------------------------FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDR

Query:  LATRDRLHRWDSSISMSCILC
        L TRDRL +WD SI +SC+LC
Subjt:  LATRDRLHRWDSSISMSCILC

TrEMBL top hitse value%identityAlignment
A0A5A7TZS0 Reverse transcriptase domain-containing protein4.0e-11759.85Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSF+FH RC KVKLTHLTFADDLMIFCAAD+ S+SFIRE LQKFGE SGLFAN RKSSIFV G +NE ASHLAA +G      P  
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
                  L   DCAPLIQRITSRIRSW  RVLSFAGRLQLVRSVLRSLQVYWASVFVLPA VHNEVDKILRSYLWRGKEEGRGG+KVAWV+VCLP E
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
        EGGL IRDGPSWNIA+TLKI   LLT+  SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  -----------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCIL
                                           GGFSIASAWE I PRGG+VLW GLLWGGGNIPKHSFC WLAIKDRL TRDRLHRWDSSI +SCIL
Subjt:  -----------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCIL

Query:  C
        C
Subjt:  C

A0A5A7UV01 F17F8.53.3e-12763.92Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSFQFH RC KVKLT+LTFADDLMIFCAAD+PS+ FIRE LQKFGELSGLFAN RKSSIFVAG +NE ASHLAA MGFV GNLP+R
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLL G+L  ND APLIQRITSRIRSW  RVLSFAGRLQLVR VLRSLQVYWASVFVLPA VH+EVDKIL SYLWRGKEEGRGG+KVAWV+VCLP E
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
        E GL IRDGPSWNIASTLKIL L+LT+S SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  ------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHR-WDS
                                      GGFSIASAWE +RPRGGQVLW GLLWGGGNIPK+SFC WLAIKDRL TRDRLHR W+S
Subjt:  ------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHR-WDS

A0A5A7V3Z0 Reverse transcriptase domain-containing protein1.1e-12759.02Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSF FH RC KVKLTHLTFADDLMIFCAA++PS+ FIRE LQKFGELSGLFAN RKSSIFVAG +NE ASHLA  MGFV GNL VR
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLL G+L  ND APLIQRITSRIRSW  RVLSFAGRLQLV SVLRS QVYWASVFVLPA VHNEVDKILRSYLWRGKEEGRGG+KVAWV+VCLP E
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
        EGGL IRDGPSWNIASTLKILWL+LT+S SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  --------------------------------------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCV
                                                                      GGFSIASAWE +RPRGG+VLW GLLWGGGNI KH FC 
Subjt:  --------------------------------------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCV

Query:  WLAIKDRLATRDRLHRWDSSISMSCIL
        WLAIKDRL T DRLHRWDSS+ M CIL
Subjt:  WLAIKDRLATRDRLHRWDSSISMSCIL

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.7e-11559.15Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSFQFH RC KVKLTHLTFADDLMIFCAAD+PS+ FIRE LQKFGELSGLFAN RKS IFVAG +NE AS LAA MGFV GNLPVR
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLLTG+L  NDCAP+IQRITSRIRSWI RVLSFAGRLQLV SVLRSLQVYWASVFVLPA VHNEVDKILRSYLW                      
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
              RDGPSWNIASTLKILWL+LTS  SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  ---------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC
                                         GGFSIASAW+ IRPRGG+VLW GLLWGG NIPKHSFC WLAIKDRL TRDRLHRWDSS+ M CILC
Subjt:  ---------------------------------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC

A0A5D3DXE4 Reverse transcriptase domain-containing protein1.9e-11460.79Show/hide
Query:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR
        MVME+LSRMLN  PQSFQFH RC KVKLTHLTFADDLMIFCAAD+ S+ FIR+ LQKFGELSGLFAN RKSSIFVAG +NE ASHLA  MGF  GNLPVR
Subjt:  MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVR

Query:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE
        YLGLPLLTG+L  NDCAPLIQRITS+IRSW  RVLSFAGRLQLVRSVLRSLQVYWASVFVLPA VHNEVDKILRSYLWRGKEEGRGG+KVAWV+VCLP E
Subjt:  YLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLE

Query:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------
        EGG  IRDGPSWNIASTLKILWL+LT+S SLWVAW                                                                 
Subjt:  EGGLAIRDGPSWNIASTLKILWLLLTSSDSLWVAW-----------------------------------------------------------------

Query:  ----------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSF--C-----VWLAIKDRLATRDRLHRWDSSISMSC
                  GGFSI+SAWE IRPRGG+VLW     GG     H F  C     VW  +   +A+  R+  W   +S  C
Subjt:  ----------GGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSF--C-----VWLAIKDRLATRDRLHRWDSSISMSC

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.5e-2037.21Show/hide
Query:  LPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLEEGG
        +P+L  +++ +    +++R++SR+  W  + LSFAGRL L ++VL S+ V+  S  +LP S+ N +D++ R++LW    E +    V W +VC P +EGG
Subjt:  LPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLEEGG

Query:  LAIRDGPSWNIASTLKILWLLLTSSDSLW
        L +R   S N A   K+ W LL   +SLW
Subjt:  LAIRDGPSWNIASTLKILWLLLTSSDSLW

Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.3e-0839.06Show/hide
Query:  FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC
        FS A     + P+   V W   +W   ++PKH+F  W+   +RL TRDRL  W  SI   C+LC
Subjt:  FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.0e-1344.44Show/hide
Query:  TSSDSL-WVAWG----GFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC
        T  DS  WV  G    GFS A  W+ IRPR  ++ WA  +W  G +PKH+F +W++  DRL TR RL  W    S  C LC
Subjt:  TSSDSL-WVAWG----GFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.9e-3429.79Show/hide
Query:  VAGGSNEVASHLAASMGFVLGNLPVRYLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILR
        +AG  +   + +  S  F  G LPVRYLGLPLLT K++ +D  PL+++I  RI  W  R LSFAGRLQL+ SV+ SL  +W S F LP++   E+D I  
Subjt:  VAGGSNEVASHLAASMGFVLGNLPVRYLGLPLLTGKLSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILR

Query:  SYLWRGKEEGRGGVKVAWVEVCLPLEEGGLAIRD------GPSWNIASTLKI---LWLLLT-----------------SSDSLW----------------
        S+LW G E      KVAW +VC P +EGGL IR       G  W+I+    +   +W  +                  S+ S W                
Subjt:  SYLWRGKEEGRGGVKVAWVEVCLPLEEGGLAIRD------GPSWNIASTLKI---LWLLLT-----------------SSDSLW----------------

Query:  ----------------------------------------------------VAWGG--------FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFC
                                                            V W G        F+    W   R    +V W   +W     PK+S  
Subjt:  ----------------------------------------------------VAWGG--------FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFC

Query:  VWLAIKDRLATRDRLHRWDSSISMSCILC
         W+AIK+RL T DR+  W++    SC+LC
Subjt:  VWLAIKDRLATRDRLHRWDSSISMSCILC

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.2e-1039.06Show/hide
Query:  FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC
        FS    W  + P+   V W   +W   ++PKH+F  W+   +RL TRDRL  W  SI   C+LC
Subjt:  FSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.8e-1143.08Show/hide
Query:  GFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC
        GFS A+ W  + P G +V W   +W  G IPKH+F  W+ I+ RL TRD+L  W   +   C+LC
Subjt:  GFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATGGAAATTCTTTCTCGTATGCTGAACATGCCTCCCCAGAGTTTCCAATTTCATCAACGTTGTGGAAAGGTTAAGTTAACTCACCTTACCTTTGCTGACGACCT
TATGATATTTTGTGCTGCTGATGATCCATCTCTAAGTTTTATTCGGGAGTCTCTTCAGAAGTTTGGTGAGCTTTCGGGTTTGTTTGCAAATCTTAGGAAAAGCTCTATTT
TTGTTGCTGGGGGTAGTAATGAGGTTGCTTCTCATCTGGCTGCTAGTATGGGTTTTGTCCTTGGAAATCTCCCTGTTCGATATCTTGGGCTTCCTTTACTTACTGGTAAG
TTAAGTCCTAATGATTGTGCTCCTCTTATTCAGCGTATTACTAGTCGGATTCGCTCTTGGATTACTAGAGTTTTATCTTTTGCTGGTAGATTGCAGCTTGTTCGTTCTGT
GCTCCGCAGTCTTCAAGTGTATTGGGCTAGTGTGTTTGTTCTTCCTGCGTCTGTGCATAATGAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGGAAG
GTAGAGGGGGTGTTAAGGTGGCGTGGGTGGAAGTGTGTCTTCCCCTTGAGGAGGGCGGACTTGCTATTCGAGATGGGCCTTCTTGGAATATTGCGAGTACTTTGAAGATT
CTGTGGTTGTTGTTGACAAGTTCAGATTCTCTTTGGGTGGCTTGGGGTGGTTTCTCTATCGCGAGTGCATGGGAAACTATTCGTCCTCGAGGTGGTCAGGTTCTTTGGGC
TGGTTTATTGTGGGGTGGGGGGAATATCCCAAAGCATTCCTTTTGTGTATGGTTGGCCATTAAAGATAGGTTGGCCACTAGAGATAGATTACATAGGTGGGATAGTTCAA
TATCGATGTCGTGTATTTTATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGATGGAAATTCTTTCTCGTATGCTGAACATGCCTCCCCAGAGTTTCCAATTTCATCAACGTTGTGGAAAGGTTAAGTTAACTCACCTTACCTTTGCTGACGACCT
TATGATATTTTGTGCTGCTGATGATCCATCTCTAAGTTTTATTCGGGAGTCTCTTCAGAAGTTTGGTGAGCTTTCGGGTTTGTTTGCAAATCTTAGGAAAAGCTCTATTT
TTGTTGCTGGGGGTAGTAATGAGGTTGCTTCTCATCTGGCTGCTAGTATGGGTTTTGTCCTTGGAAATCTCCCTGTTCGATATCTTGGGCTTCCTTTACTTACTGGTAAG
TTAAGTCCTAATGATTGTGCTCCTCTTATTCAGCGTATTACTAGTCGGATTCGCTCTTGGATTACTAGAGTTTTATCTTTTGCTGGTAGATTGCAGCTTGTTCGTTCTGT
GCTCCGCAGTCTTCAAGTGTATTGGGCTAGTGTGTTTGTTCTTCCTGCGTCTGTGCATAATGAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGGAAG
GTAGAGGGGGTGTTAAGGTGGCGTGGGTGGAAGTGTGTCTTCCCCTTGAGGAGGGCGGACTTGCTATTCGAGATGGGCCTTCTTGGAATATTGCGAGTACTTTGAAGATT
CTGTGGTTGTTGTTGACAAGTTCAGATTCTCTTTGGGTGGCTTGGGGTGGTTTCTCTATCGCGAGTGCATGGGAAACTATTCGTCCTCGAGGTGGTCAGGTTCTTTGGGC
TGGTTTATTGTGGGGTGGGGGGAATATCCCAAAGCATTCCTTTTGTGTATGGTTGGCCATTAAAGATAGGTTGGCCACTAGAGATAGATTACATAGGTGGGATAGTTCAA
TATCGATGTCGTGTATTTTATGTTAG
Protein sequenceShow/hide protein sequence
MVMEILSRMLNMPPQSFQFHQRCGKVKLTHLTFADDLMIFCAADDPSLSFIRESLQKFGELSGLFANLRKSSIFVAGGSNEVASHLAASMGFVLGNLPVRYLGLPLLTGK
LSPNDCAPLIQRITSRIRSWITRVLSFAGRLQLVRSVLRSLQVYWASVFVLPASVHNEVDKILRSYLWRGKEEGRGGVKVAWVEVCLPLEEGGLAIRDGPSWNIASTLKI
LWLLLTSSDSLWVAWGGFSIASAWETIRPRGGQVLWAGLLWGGGNIPKHSFCVWLAIKDRLATRDRLHRWDSSISMSCILC