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Cmc06g0166801 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0166801
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr06:19472496..19472798
RNA-Seq ExpressionCmc06g0166801
SyntenyCmc06g0166801
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031710.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.1e-4491Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH
        MAA RTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWLH
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH

KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.5e-4391.92Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALAD TAE LWL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

KAA0064888.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.3e-4491.92Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

TYK26219.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.3e-4491.92Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

TYK30390.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.8e-4592Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH
        MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWLH
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH

TrEMBL top hitse value%identityAlignment
A0A5A7SLT8 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-4491Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH
        MAA RTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWLH
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH

A0A5A7VBA1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-4491.92Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-4491.92Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALAD TAE LWL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

A0A5D3DS09 Putative mitochondrial protein2.6e-4491.92Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

A0A5D3E4B0 Putative mitochondrial protein2.3e-4592Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH
        MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS  GYCFYLGDSLI WRSKK +VVSRSSTE EYRALADTTAE LWLH
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.4e-1547.19Show/hide
Query:  RILRYVKGTLGHGLQFSSQSSL--VLSGYSDADWAGDPTDRRSKIGYCFYLGD-SLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        R+LRY+KGT+   L F    +    + GY D+DWAG   DR+S  GY F + D +LICW +K+ N V+ SSTE EY AL +   E LWL
Subjt:  RILRYVKGTLGHGLQFSSQSSL--VLSGYSDADWAGDPTDRRSKIGYCFYLGD-SLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

P0CV72 Secreted RxLR effector protein 1614.3e-2048.96Show/hide
Query:  PRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        P   H+ A+ R+LRY++ T  +GL+F+   +  L GYSDADWAGD   RRS  GY F L    + WRSKK   V+ SSTE EY AL++ T E +WL
Subjt:  PRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

P92519 Uncharacterized mitochondrial protein AtMg008103.3e-2048.98Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLW
        M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRS  G+C +LG ++I W +K+   VSRSSTE EYRALA T AE  W
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.6e-1949.49Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        M  P   H  A+ RILRY+ GT  HG+     ++L L  YSDADWAGD  D  S  GY  YLG   I W SKK   V RSSTE EYR++A+T++E  W+
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.8e-1948.48Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        M  P   H+ A+ R+LRY+ GT  HG+     ++L L  YSDADWAGD  D  S  GY  YLG   I W SKK   V RSSTE EYR++A+T++E  W+
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 86.5e-2453.61Show/hide
Query:  APRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL
        APR  H  AV++IL Y+KGT+G GL +SSQ+ + L  +SDA +      RRS  GYC +LG SLI W+SKK  VVS+SS E EYRAL+  T E +WL
Subjt:  APRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWL

ATMG00240.1 Gag-Pol-related retrotransposon family protein1.8e-1048.28Show/hide
Query:  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYC
        +A RT    AV ++L YVKGT+G GL +S+ S L L  ++D+DWA  P  RRS  G+C
Subjt:  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYC

ATMG00810.1 DNA/RNA polymerases superfamily protein2.3e-2148.98Show/hide
Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLW
        M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRS  G+C +LG ++I W +K+   VSRSSTE EYRALA T AE  W
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTCCTCGAACCATCCATTTTACTGCCGTACTACGTATCCTTCGCTATGTTAAGGGGACTTTAGGGCATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATT
ATCTGGTTATTCTGATGCAGATTGGGCTGGGGATCCCACTGATCGGCGTTCTAAAATAGGCTACTGCTTCTACTTAGGCGATTCTCTCATTTGTTGGCGTAGTAAGAAAC
ACAATGTTGTCTCTCGTTCTAGTACTGAATTAGAATATCGTGCTCTTGCTGATACTACCGCTGAACAGTTATGGCTTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTCCTCGAACCATCCATTTTACTGCCGTACTACGTATCCTTCGCTATGTTAAGGGGACTTTAGGGCATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATT
ATCTGGTTATTCTGATGCAGATTGGGCTGGGGATCCCACTGATCGGCGTTCTAAAATAGGCTACTGCTTCTACTTAGGCGATTCTCTCATTTGTTGGCGTAGTAAGAAAC
ACAATGTTGTCTCTCGTTCTAGTACTGAATTAGAATATCGTGCTCTTGCTGATACTACCGCTGAACAGTTATGGCTTCATTGA
Protein sequenceShow/hide protein sequence
MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSKIGYCFYLGDSLICWRSKKHNVVSRSSTELEYRALADTTAEQLWLH