; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0166841 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0166841
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:19567264..19568253
RNA-Seq ExpressionCmc06g0166841
SyntenyCmc06g0166841
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-18198.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-18198.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-18198.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-18198.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-18198.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase6.7e-18298.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

A0A5A7T3K4 Reverse transcriptase6.7e-18298.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

A0A5A7U2V7 Reverse transcriptase6.7e-18298.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

A0A5A7UUL6 Reverse transcriptase6.7e-18298.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

A0A5D3BHI1 Reverse transcriptase6.7e-18298.18Show/hide
Query:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF
        MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNWERPISATEVRSF
Subjt:  MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSF

Query:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
        LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP
Subjt:  LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYP

Query:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS
        THDLELAAVVLALKIWRHYLFGEK HIFTDHKSLKYIFDQKELNLRQ+RWLELIKDYDCTIEYHPGKANVVADALSRKSRL KSALCGIRVALLNELRGS
Subjt:  THDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGS

Query:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR
        KAVVTTEDSGSLLAQFQVRSSLVT+IVRR
Subjt:  KAVVTTEDSGSLLAQFQVRSSLVTKIVRR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.8e-5740.36Show/hide
Query:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL
        MN I    L++  +V++DDI+V+S   + H + L +V + L +  L  +  KCEF  ++  FLGHV++  G+  +P+K+EAI  +  P    E+++FLGL
Subjt:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLTALTRKNVKFEWSD-KCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPTH
         GYYR+FI +F+ +A P+T   +KN+K + ++ + + +F+KLK  +   PIL +P   K + +  DAS + LG VL QDG+ ++Y SR L EHE NY T 
Subjt:  AGYYRRFIEDFSRLALPLTALTRKNVKFEWSD-KCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPTH

Query:  DLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR
        + EL A+V A K +RHYL G  F I +DH+ L +++  K+ N +  RW   + ++D  I+Y  GK N VADALSR
Subjt:  DLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR

P0CT41 Transposon Tf2-12 polyprotein3.7e-4434.28Show/hide
Query:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL
        +N I     +  V+ ++DDIL++S     H +H++ VLQ L+   L    +KCEF   QV F+G+ +S KG +   + ++ ++ W++P +  E+R FLG 
Subjt:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGN-----VIAYASRQLKEHECN
          Y R+FI   S+L  PL  L +K+V+++W+    Q+ + +K+ LV+ P+L      K  ++  DAS + +G VL Q  +      + Y S ++ + + N
Subjt:  AGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGN-----VIAYASRQLKEHECN

Query:  YPTHDLELAAVVLALKIWRHYLFG--EKFHIFTDHKSL--KYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR
        Y   D E+ A++ +LK WRHYL    E F I TDH++L  +   + +  N R  RW   ++D++  I Y PG AN +ADALSR
Subjt:  YPTHDLELAAVVLALKIWRHYLFG--EKFHIFTDHKSL--KYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.5e-4535.29Show/hide
Query:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL
        ++ +    + +   V++DD++++S +   H  H+  VL+ L +  +     K  F+ E V +LG +VS  G   DP+KV+AI  +  P    +VRSFLGL
Subjt:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLTALTR-----------KNVKFEWSDKCEQSFQKLKKRLVTAP-ILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQ
        A YYR FI+DF+ +A P+T + +           K +  E+++    +FQ+L+  L +   IL  P   K + +  DAS  G+G VL Q+G  I   SR 
Subjt:  AGYYRRFIEDFSRLALPLTALTR-----------KNVKFEWSDKCEQSFQKLKKRLVTAP-ILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQ

Query:  LKEHECNYPTHDLELAAVVLALKIWRHYLFGEK-FHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKS
        LK+ E NY T++ EL A+V AL   +++L+G +  +IFTDH+ L +    +  N + KRW   I  ++  + Y PGK N VADALSR++
Subjt:  LKEHECNYPTHDLELAAVVLALKIWRHYLFGEK-FHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKS

P20825 Retrovirus-related Pol polyprotein from transposon 2972.7e-5540.22Show/hide
Query:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL
        MN I    L++  +V++DDI+++S     H   +++V   L +  L  +  KCEF  ++  FLGH+V+  G+  +P KV+AIV++  P    E+R+FLGL
Subjt:  MNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCE--QSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPT
         GYYR+FI +++ +A P+T+  +K  K + + K E  ++F+KLK  ++  PIL LP   K +V+  DAS L LG VL Q+G+ I++ SR L +HE NY  
Subjt:  AGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCE--QSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPT

Query:  HDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR
         + EL A+V A K +RHYL G +F I +DH+ L+++ + KE   + +RW   + +Y   I+Y  GK N VADALSR
Subjt:  HDLELAAVVLALKIWRHYLFGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.1e-5139.52Show/hide
Query:  LMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLG
        +++ I   ++ +   V+IDDI+V+S D ++H ++LR+VL +L +  L     K  F   QV FLG++V+A G+  DP+KV AI     P S  E++ FLG
Subjt:  LMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLG

Query:  LAGYYRRFIEDFSRLALPLTALTR---KNVKFEWSDKCE--------QSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQD----GNVIAY
        +  YYR+FI+D++++A PLT LTR    N+K   S K          QSF  LK  L ++ ILA P   K + +  DAS   +G VL QD       IAY
Subjt:  LAGYYRRFIEDFSRLALPLTALTR---KNVKFEWSDKCE--------QSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQD----GNVIAY

Query:  ASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGE-KFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR
         SR L + E NY T + E+ A++ +L   R YL+G     ++TDH+ L +    +  N + KRW   I++Y+C + Y PGK+NVVADALSR
Subjt:  ASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGE-KFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.4e-2745.16Show/hide
Query:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEW
        HL +VLQ   + Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN   +W
Subjt:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEW

Query:  SDKCEQSFQKLKKRLVTAPILALP
        ++    +F+ LK  + T P+LALP
Subjt:  SDKCEQSFQKLKKRLVTAPILALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAATCTCATGAGGAACATCT
GAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTAGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAG
GAGTTAGTGTCGATCCACAAAAAGTAGAAGCAATTGTCAATTGGGAAAGACCAATTAGTGCCACAGAAGTACGTAGTTTCCTAGGTTTGGCAGGATACTATAGGCGTTTT
ATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGAAATTGAAGAAAAG
ACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATG
TAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTAAAAATCTGGAGACACTATTTG
TTCGGGGAAAAGTTCCATATCTTCACGGATCATAAAAGTCTGAAGTATATTTTTGATCAAAAAGAGCTAAATCTGAGACAAAAGCGATGGCTAGAACTGATTAAAGATTA
TGATTGTACTATAGAGTATCATCCAGGTAAGGCCAACGTAGTAGCAGATGCATTAAGTAGGAAGTCAAGACTTTTGAAGAGTGCCTTGTGTGGTATTCGAGTAGCTTTGT
TGAATGAGTTAAGAGGTTCCAAGGCAGTAGTAACTACAGAGGACTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTAAGATTGTAAGAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAATCTCATGAGGAACATCT
GAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTAGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAG
GAGTTAGTGTCGATCCACAAAAAGTAGAAGCAATTGTCAATTGGGAAAGACCAATTAGTGCCACAGAAGTACGTAGTTTCCTAGGTTTGGCAGGATACTATAGGCGTTTT
ATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGAAATTGAAGAAAAG
ACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATG
TAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTAAAAATCTGGAGACACTATTTG
TTCGGGGAAAAGTTCCATATCTTCACGGATCATAAAAGTCTGAAGTATATTTTTGATCAAAAAGAGCTAAATCTGAGACAAAAGCGATGGCTAGAACTGATTAAAGATTA
TGATTGTACTATAGAGTATCATCCAGGTAAGGCCAACGTAGTAGCAGATGCATTAAGTAGGAAGTCAAGACTTTTGAAGAGTGCCTTGTGTGGTATTCGAGTAGCTTTGT
TGAATGAGTTAAGAGGTTCCAAGGCAGTAGTAACTACAGAGGACTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTAAGATTGTAAGAAGATAG
Protein sequenceShow/hide protein sequence
MDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGLAGYYRRF
IEDFSRLALPLTALTRKNVKFEWSDKCEQSFQKLKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYL
FGEKFHIFTDHKSLKYIFDQKELNLRQKRWLELIKDYDCTIEYHPGKANVVADALSRKSRLLKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTKIVRR