; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0166971 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0166971
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:19753691..19754449
RNA-Seq ExpressionCmc06g0166971
SyntenyCmc06g0166971
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

KAA0048607.1 hypothetical protein E6C27_scaffold61G002600 [Cucumis melo var. makuwa]1.3e-12896.2Show/hide
Query:  IDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRLALPLTALTRK
        I REAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAV NWERPTSAIEVRSFLGLT YYRRFIEDFSRLALPLTALTRK
Subjt:  IDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRLALPLTALTRK

Query:  NDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWIHYLFKKKCHI
         DKFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYA KQLKEHECNYPTHDLELAAVVLALKIW HYLF+KKCHI
Subjt:  NDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWIHYLFKKKCHI

Query:  FTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        FTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
Subjt:  FTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase1.5e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

A0A5A7U2V7 Reverse transcriptase1.5e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

A0A5A7UUL6 Reverse transcriptase1.5e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

A0A5D3BHI1 Reverse transcriptase1.5e-12891.5Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +FIDDILVYS+DRE+HEEHLRIVLQTL +KQLYAKFSKCEFWLEQVVFLGHVVSAKGVS+DPQKVEAVVNWERP SA EVRSFLGL GYYRRFIEDFSRL
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI
        ALPLTALTRKN KFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVL+QDGNVIAYA +QLKEHECNYPTHDLELAAVVLALKIW 
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWI

Query:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        HYLF +KCHIFTD+KSLKYIF QKELNLRQ+RWLELIKDYDCTIEYH
Subjt:  HYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

A0A5D3DU25 Uncharacterized protein6.5e-12996.2Show/hide
Query:  IDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRLALPLTALTRK
        I REAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAV NWERPTSAIEVRSFLGLT YYRRFIEDFSRLALPLTALTRK
Subjt:  IDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRLALPLTALTRK

Query:  NDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWIHYLFKKKCHI
         DKFEWSDKCEQSFQ+LKKRLVT PILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYA KQLKEHECNYPTHDLELAAVVLALKIW HYLF+KKCHI
Subjt:  NDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWIHYLFKKKCHI

Query:  FTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
        FTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH
Subjt:  FTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEYH

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.5e-4536.84Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +++DDI+V+S   + H + L +V + L    L  +  KCEF  ++  FLGHV++  G+  +P+K+EA+  +  PT   E+++FLGLTGYYR+FI +F+ +
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSD-KCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIW
        A P+T   +KN K + ++ + + +F+KLK  +   PIL +P   K + +  DAS + LG VL QDG+ ++Y  + L EHE NY T + EL A+V A K +
Subjt:  ALPLTALTRKNDKFEWSD-KCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIW

Query:  IHYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY
         HYL  +   I +D++ L +++  K+ N +  RW   + ++D  I+Y
Subjt:  IHYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY

P10401 Retrovirus-related Pol polyprotein from transposon gypsy6.9e-3532.82Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +++DD++++S +   H  H+  VL+ L D  +     K  F+ E V +LG +VS  G   DP+KV+A+  +  P    +VRSFLGL  YYR FI+DF+ +
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTR-----------KNDKFEWSDKCEQSFQKLKKRLVTVP-ILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLE
        A P+T + +           K    E+++    +FQ+L+  L +   IL  P   K + +  DAS  G+G VL Q+G  I    + LK+ E NY T++ E
Subjt:  ALPLTALTR-----------KNDKFEWSDKCEQSFQKLKKRLVTVP-ILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLE

Query:  LAAVVLALKIWIHYLF-KKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY
        L A+V AL    ++L+  ++ +IFTD++ L +    +  N + KRW   I  ++  + Y
Subjt:  LAAVVLALKIWIHYLF-KKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY

P20825 Retrovirus-related Pol polyprotein from transposon 2972.8e-4437.1Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +++DDI+++S     H   +++V   L D  L  +  KCEF  ++  FLGH+V+  G+  +P KV+A+V++  PT   E+R+FLGLTGYYR+FI +++ +
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCE--QSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKI
        A P+T+  +K  K + + K E  ++F+KLK  ++  PIL LP   K +V+  DAS L LG VL Q+G+ I++  + L +HE NY   + EL A+V A K 
Subjt:  ALPLTALTRKNDKFEWSDKCE--QSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKI

Query:  WIHYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY
        + HYL  ++  I +D++ L+++   KE   + +RW   + +Y   I+Y
Subjt:  WIHYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.4e-3233.6Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        +++DDIL++S   E H +HL  VL+ L ++ L  K  KC+F  E+  FLG+ +  + ++    K  A+ ++  P +  + + FLG+  YYRRFI + S++
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGK-DYVIYCDASRLGLGCVLIQDGN------VIAYALKQLKEHECNYPTHDLELAAVV
        A P+       DK +W++K +++ +KLK  L   P+L +P   K +Y +  DAS+ G+G VL +  N      V+ Y  K L+  + NYP  +LEL  ++
Subjt:  ALPLTALTRKNDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGK-DYVIYCDASRLGLGCVLIQDGN------VIAYALKQLKEHECNYPTHDLELAAVV

Query:  LALKIWIHYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY
         AL  + + L  K   + TD+ SL  +  + E   R +RWL+ +  YD T+EY
Subjt:  LALKIWIHYLFKKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.8e-3837.02Show/hide
Query:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL
        ++IDDI+V+S D + H ++LR+VL +L    L     K  F   QV FLG++V+A G+  DP+KV A+     PTS  E++ FLG+T YYR+FI+D++++
Subjt:  MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRL

Query:  ALPLTALTR---KNDKFEWSDKCE--------QSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQD----GNVIAYALKQLKEHECNYPTH
        A PLT LTR    N K   S K          QSF  LK  L +  ILA P   K + +  DAS   +G VL QD       IAY  + L + E NY T 
Subjt:  ALPLTALTR---KNDKFEWSDKCE--------QSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQD----GNVIAYALKQLKEHECNYPTH

Query:  DLELAAVVLALKIWIHYLF-KKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY
        + E+ A++ +L     YL+      ++TD++ L +    +  N + KRW   I++Y+C + Y
Subjt:  DLELAAVVLALKIWIHYLF-KKKCHIFTDNKSLKYIFYQKELNLRQKRWLELIKDYDCTIEY

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein7.1e-2745.16Show/hide
Query:  HLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRLALPLTALTRKNDKFEW
        HL +VLQ     Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P +  E+R FLGLTGYYRRF++++ ++  PLT L +KN   +W
Subjt:  HLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRLALPLTALTRKNDKFEW

Query:  SDKCEQSFQKLKKRLVTVPILALP
        ++    +F+ LK  + T+P+LALP
Subjt:  SDKCEQSFQKLKKRLVTVPILALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATTGATGATATATTAGTTTACTCGATTGACAGAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTATGTGATAAACAGTTGTACGCTAAGTTCAG
CAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTATCGATCCACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGAC
CAACTAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTGACAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAG
AATGATAAGTTTGAGTGGTCAGATAAATGTGAGCAAAGTTTTCAGAAATTGAAGAAAAGACTAGTCACCGTACCTATTCTGGCACTTCCTGTAACAGGGAAGGACTATGT
GATTTATTGTGACGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATACAGGATGGGAATGTAATAGCTTATGCTTTAAAGCAGTTAAAGGAGCATGAGTGTAATTACCCTA
CCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCATTAAAAATCTGGATACACTATTTGTTCAAGAAAAAGTGCCATATTTTCACAGATAATAAGAGCCTGAAGTACATT
TTTTATCAGAAAGAGCTAAATCTGAGACAAAAGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCACCAGGTAAGGCTAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCATTGATGATATATTAGTTTACTCGATTGACAGAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTATGTGATAAACAGTTGTACGCTAAGTTCAG
CAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTATCGATCCACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGAC
CAACTAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTGACAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAG
AATGATAAGTTTGAGTGGTCAGATAAATGTGAGCAAAGTTTTCAGAAATTGAAGAAAAGACTAGTCACCGTACCTATTCTGGCACTTCCTGTAACAGGGAAGGACTATGT
GATTTATTGTGACGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATACAGGATGGGAATGTAATAGCTTATGCTTTAAAGCAGTTAAAGGAGCATGAGTGTAATTACCCTA
CCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCATTAAAAATCTGGATACACTATTTGTTCAAGAAAAAGTGCCATATTTTCACAGATAATAAGAGCCTGAAGTACATT
TTTTATCAGAAAGAGCTAAATCTGAGACAAAAGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCACCAGGTAAGGCTAAGGTAG
Protein sequenceShow/hide protein sequence
MFIDDILVYSIDREAHEEHLRIVLQTLCDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSIDPQKVEAVVNWERPTSAIEVRSFLGLTGYYRRFIEDFSRLALPLTALTRK
NDKFEWSDKCEQSFQKLKKRLVTVPILALPVTGKDYVIYCDASRLGLGCVLIQDGNVIAYALKQLKEHECNYPTHDLELAAVVLALKIWIHYLFKKKCHIFTDNKSLKYI
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