CuGenDBv2

Gene ID	Cmc06g0167021
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II CP47 reaction center protein
Genome location	CMiso1.1chr06:19827040..19827312
RNA-Seq Expression	Cmc06g0167021
Synteny	Cmc06g0167021
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0022904 - respiratory electron transport chain (biological process) GO:0050821 - protein stabilization (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0070469 - respirasome (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0042301 - phosphate ion binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ALB37129.1 photosystem II 47 kDa protein [Alloteropsis semialata]

4.5e-34

78.89

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHP+FRDKEGCELFVR M TFFETFPVVLVDE+GIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

XP_027337999.1 uncharacterized protein LOC113851671 [Abrus precatorius]

7.6e-34

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEGCELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

YP_009764677.1 PsbB [Canavalia cathartica]

7.6e-34

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEGCELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

YP_009772278.1 PsbB [Abrus precatorius]

7.6e-34

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEGCELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

YP_009940812.1 PSII 47 kDa protein [Bontia daphnoides]

7.6e-34

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEGCELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

TrEMBL top hits

e value

%identity

Alignment

A0A0M3PSP9 Photosystem II CP47 reaction center protein

2.2e-34

78.89

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHP+FRDKEGCELFVR M TFFETFPVVLVDE+GIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

A0A222NM95 Photosystem II CP47 reaction center protein

3.7e-34

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEGCELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

A0A2I6C1L9 Photosystem II CP47 reaction center protein

3.7e-34

78.89

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEGCELFVR M TFFETFPVVL+D DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

A0A4D5Z279 Photosystem II CP47 reaction center protein

3.7e-34

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHP+FRDKEGCELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVTIEFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

A0A6H0EP67 Photosystem II CP47 reaction center protein

3.7e-34

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEGCELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

SwissProt top hits

e value

%identity

Alignment

A4GGD1 Photosystem II CP47 reaction center protein

8.5e-36

78.89

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEG ELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNG+SY DPTTVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

A6MMN3 Photosystem II CP47 reaction center protein

6.5e-36

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEG ELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DPTTVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

P0C362 Photosystem II CP47 reaction center protein

1.1e-35

78.89

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEG ELFVR M TFFETFPVVLVDE+GIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

P0C363 Photosystem II CP47 reaction center protein

1.1e-35

78.89

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEG ELFVR M TFFETFPVVLVDE+GIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

Q6ENE8 Photosystem II CP47 reaction center protein

1.1e-35

78.89

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHPIFRDKEG ELFVR M TFFETFPVVLVDE+GIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

8.7e-36

76.67

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Query:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK
        MD  +   VGWLGHP+FR+KEG ELFVR M TFFETFPVVLVD DGIVR D PF+R E KYSVEQVGVT+EFYG ELNGVSY DP TVKK
Subjt:  MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

Sequences

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CDS sequence

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ATGGACATCGCGAATAGAAGAACTGTTGGTTGGTTAGGACACCCTATTTTTAGAGATAAAGAAGGGTGCGAACTTTTTGTACGCTGTATGTCGACCTTTTTTGAA
ACATTTCCAGTCGTTTTGGTAGACGAAGATGGAATTGTTAGAGTTGATTTTCCTTTTCAAAGACCAGAACCGAAGTACAGTGTTGAACAAGTCGGTGTAACTATT
GAGTTCTATGGTAGTGAACTCAATGGAGTTAGTTATATTGATCCTACTACTGTGAAAAAATAG

mRNA sequence

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Protein sequence

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MDIANRRTVGWLGHPIFRDKEGCELFVRCMSTFFETFPVVLVDEDGIVRVDFPFQRPEPKYSVEQVGVTIEFYGSELNGVSYIDPTTVKK

Cmc06g0167021 (gene) of Melon (Charmono) v1.1 genome