; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0167061 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0167061
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:19952738..19953466
RNA-Seq ExpressionCmc06g0167061
SyntenyCmc06g0167061
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025998.1 pol protein [Cucumis melo var. makuwa]4.9e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

KAA0048615.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-13496.69Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGL RTLKGYTVIWVVVDRLTK AHFVQGKSTYTASKWEQLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIV D+NACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGEIGERRLLGPELVQT NAAIQKIRARMLT +SR KSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

KAA0050760.1 pol protein [Cucumis melo var. makuwa]4.9e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

TYK01576.1 pol protein [Cucumis melo var. makuwa]4.9e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

TYK20443.1 pol protein [Cucumis melo var. makuwa]4.9e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

TrEMBL top hitse value%identityAlignment
A0A5A7SIJ5 Reverse transcriptase2.4e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

A0A5A7U6G5 Reverse transcriptase2.4e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

A0A5D3BTN0 Reverse transcriptase2.4e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

A0A5D3C6W3 Reverse transcriptase2.4e-12892.15Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKR VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMD ITGLP+TLKGYTVIWVVVDRLTK AHFV GKSTYTASKW QLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIVSDR+A FTSKFWKGLQ+ALGTRLDFSTAFHPQTDGQ ERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CC+SPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGE+GE+R+LGPELVQTTNAAIQKIRARMLT  SRQKSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

A0A5D3DUM4 Ty3-gypsy retrotransposon protein7.7e-13596.69Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGL RTLKGYTVIWVVVDRLTK AHFVQGKSTYTASKWEQLYMTEIVRLHGVP
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
        VSIV D+NACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
        WGEIGERRLLGPELVQT NAAIQKIRARMLT +SR KSYADV
Subjt:  WGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.3e-3231.28Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        +++ + ++V  C  CQ  K+   +P G LQP+      WES+SMD IT LP +  GY  ++VVVDR +K+A  V    + TA +  +++   ++   G P
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRC-CKSPV
          I++D +  FTS+ WK         + FS  + PQTDGQ ER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRC-CKSPV

Query:  CWGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
              ++     E  Q T    Q ++  + T   + K Y D+
Subjt:  CWGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

P0CT41 Transposon Tf2-12 polyprotein5.3e-3231.28Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        +++ + ++V  C  CQ  K+   +P G LQP+      WES+SMD IT LP +  GY  ++VVVDR +K+A  V    + TA +  +++   ++   G P
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRC-CKSPV
          I++D +  FTS+ WK         + FS  + PQTDGQ ER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRC-CKSPV

Query:  CWGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
              ++     E  Q T    Q ++  + T   + K Y D+
Subjt:  CWGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.5e-3436.49Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        ++  +  ++  C+ CQ +K+ R R  GLLQPL +   +W  +SMD +TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
         +I SDR+   T+  ++ L   LG +   S+A HPQTDGQ ER  Q L  +LRA V     +W  +L  +EF YN++   T+G +PFE   G    +P  
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WG--EIGERRLLGPELVQTTNA
            E+  R     EL +   A
Subjt:  WG--EIGERRLLGPELVQTTNA

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.3e-3436.04Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        ++  +  ++  C+ CQ +K+ R R  GLLQPL +   +W  +SMD +TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC
         +I SDR+   T+  ++ L   LG +   S+A HPQTDGQ ER  Q L  +LRA       +W  +L  +EF YN++   T+G +PFE   G    +P  
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVC

Query:  WG--EIGERRLLGPELVQTTNA
            E+  R     EL +   A
Subjt:  WG--EIGERRLLGPELVQTTNA

Q9UR07 Transposon Tf2-11 polyprotein5.3e-3231.28Show/hide
Query:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP
        +++ + ++V  C  CQ  K+   +P G LQP+      WES+SMD IT LP +  GY  ++VVVDR +K+A  V    + TA +  +++   ++   G P
Subjt:  MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVP

Query:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRC-CKSPV
          I++D +  FTS+ WK         + FS  + PQTDGQ ER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRC-CKSPV

Query:  CWGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV
              ++     E  Q T    Q ++  + T   + K Y D+
Subjt:  CWGEIGERRLLGPELVQTTNAAIQKIRARMLTTYSRQKSYADV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGAGGAGTGGCAGATTTTGTCAGTAGATGTTTGGTATGCCAGCAGGTGAAGGCGCCTAGACAGAGGCCAGTAGGGTTGTTGCAACCTTTGAGTGTGCCA
GGATGGAAATGGGAGAGTGTGTCGATGGACTGCATTACAGGACTGCCAAGGACTCTAAAGGGCTATACAGTGATCTGGGTTGTTGTTGACAGACTCACGAAGTTA
GCCCACTTTGTTCAAGGGAAGTCCACTTACACTGCCAGTAAGTGGGAACAGTTATATATGACCGAGATAGTGAGACTACATGGAGTGCCGGTATCTATCGTTTCT
GACAGAAATGCTTGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGCACGAGGTTAGACTTCAGCACAGCTTTTCATCCTCAGACTGATGGTCAA
AAAGAGAGGTTGAACCAGATATTGGAGGACATGCTTCGAGCCTGTGTGCTAGAGTTTTCAGGGAGTTGGGACTCCCATTTGCATTTGATGGAGTTCGCCTATAAC
AACAGTTATCAGGCCACCATTGGTATGGCGCCGTTTGAAGCTCTGTATGGTAGGTGTTGCAAGTCTCCTGTCTGTTGGGGGGAGATAGGCGAACGACGACTGCTA
GGTCCCGAATTAGTGCAGACCACCAATGCAGCCATACAGAAGATTAGAGCTCGTATGTTGACAACATATAGCAGACAGAAGAGTTATGCTGATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGAGGAGTGGCAGATTTTGTCAGTAGATGTTTGGTATGCCAGCAGGTGAAGGCGCCTAGACAGAGGCCAGTAGGGTTGTTGCAACCTTTGAGTGTGCCA
GGATGGAAATGGGAGAGTGTGTCGATGGACTGCATTACAGGACTGCCAAGGACTCTAAAGGGCTATACAGTGATCTGGGTTGTTGTTGACAGACTCACGAAGTTA
GCCCACTTTGTTCAAGGGAAGTCCACTTACACTGCCAGTAAGTGGGAACAGTTATATATGACCGAGATAGTGAGACTACATGGAGTGCCGGTATCTATCGTTTCT
GACAGAAATGCTTGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGCACGAGGTTAGACTTCAGCACAGCTTTTCATCCTCAGACTGATGGTCAA
AAAGAGAGGTTGAACCAGATATTGGAGGACATGCTTCGAGCCTGTGTGCTAGAGTTTTCAGGGAGTTGGGACTCCCATTTGCATTTGATGGAGTTCGCCTATAAC
AACAGTTATCAGGCCACCATTGGTATGGCGCCGTTTGAAGCTCTGTATGGTAGGTGTTGCAAGTCTCCTGTCTGTTGGGGGGAGATAGGCGAACGACGACTGCTA
GGTCCCGAATTAGTGCAGACCACCAATGCAGCCATACAGAAGATTAGAGCTCGTATGTTGACAACATATAGCAGACAGAAGAGTTATGCTGATGTTTGA
Protein sequenceShow/hide protein sequence
MKRGVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDCITGLPRTLKGYTVIWVVVDRLTKLAHFVQGKSTYTASKWEQLYMTEIVRLHGVPVSIVS
DRNACFTSKFWKGLQLALGTRLDFSTAFHPQTDGQKERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCKSPVCWGEIGERRLL
GPELVQTTNAAIQKIRARMLTTYSRQKSYADV