; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0167281 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0167281
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:20362686..20363705
RNA-Seq ExpressionCmc06g0167281
SyntenyCmc06g0167281
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025998.1 pol protein [Cucumis melo var. makuwa]1.3e-17489.97Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPY+MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRD DIPKTAFRS+YGHYEF+VMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

KAA0033486.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-17490.27Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KN YPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRDSDIPKTAFRS+YGHYEF+VMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

KAA0045309.1 pol protein [Cucumis melo var. makuwa]4.9e-17489.68Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P +E+DFAIELEPGTA ISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRD DIPKTAFRS+YGHYEF+V+SFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

KAA0060745.1 pol protein [Cucumis melo var. makuwa]1.7e-17489.97Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPY+MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRD DIPKTAFRS+YGHYEF+VMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

TYK01306.1 pol protein [Cucumis melo var. makuwa]2.2e-17490.27Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPY+MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRDSDIPKTAFR +YGHYEFIVMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

TrEMBL top hitse value%identityAlignment
A0A5A7SIJ5 Reverse transcriptase6.2e-17589.97Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPY+MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRD DIPKTAFRS+YGHYEF+VMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

A0A5A7SU25 Reverse transcriptase1.1e-17490.27Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KN YPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRDSDIPKTAFRS+YGHYEF+VMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

A0A5A7TVN9 Reverse transcriptase2.4e-17489.68Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P +E+DFAIELEPGTA ISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRD DIPKTAFRS+YGHYEF+V+SFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

A0A5A7V4E4 Reverse transcriptase8.1e-17589.97Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPY+MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRD DIPKTAFRS+YGHYEF+VMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

A0A5D3BSV9 Reverse transcriptase1.1e-17490.27Show/hide
Query:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG
        M+DFD+ILG DWLSANHA+IDCFGKEVVFNP SG SFKFRGAG++CIPKVISAMKASKLLSQGTWGILASVVD REPEVSLSSEPVVREYPDVFPD+LPG
Subjt:  MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPG

Query:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ
        + P RE+DFAIELEPGTA ISRAPY+MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT KNRYPL  IDDLFDQLQ
Subjt:  ILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQ

Query:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK
        GATVFSKIDLRS YHQLRIRDSDIPKTAFR +YGHYEFIVMSFGLTNAP VFMDLMN VFKDFLDSF IVFIDDILIYSKTEAEHE HLHQ+LE LRANK
Subjt:  GATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANK

Query:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN
        LYAKFS C+FWL+ VTFLGHVVS+EGVSVDPAKIEAVTN
Subjt:  LYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAVTN

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.9e-4132.96Show/hide
Query:  REPEVSLSSEPVVREYPDVF----PDKLPGILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
        +EPE+      + +E+ D+      +KLP   P++ ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R
Subjt:  REPEVSLSSEPVVREYPDVF----PDKLPGILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR

Query:  LCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIV
        + +DY+ LNK    N YPL  I+ L  ++QG+T+F+K+DL+S+YH +R+R  D  K AFR   G +E++VM +G++ AP  F   +N +  +  +S  + 
Subjt:  LCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIV

Query:  FIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV
        ++DDILI+SK+E+EH  H+  +L+ L+   L    + C+F    V F+G+ +S +G +     I+ V
Subjt:  FIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV

P0CT35 Transposon Tf2-2 polyprotein3.9e-4132.96Show/hide
Query:  REPEVSLSSEPVVREYPDVF----PDKLPGILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
        +EPE+      + +E+ D+      +KLP   P++ ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R
Subjt:  REPEVSLSSEPVVREYPDVF----PDKLPGILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR

Query:  LCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIV
        + +DY+ LNK    N YPL  I+ L  ++QG+T+F+K+DL+S+YH +R+R  D  K AFR   G +E++VM +G++ AP  F   +N +  +  +S  + 
Subjt:  LCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIV

Query:  FIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV
        ++DDILI+SK+E+EH  H+  +L+ L+   L    + C+F    V F+G+ +S +G +     I+ V
Subjt:  FIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV

P0CT41 Transposon Tf2-12 polyprotein3.9e-4132.96Show/hide
Query:  REPEVSLSSEPVVREYPDVF----PDKLPGILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
        +EPE+      + +E+ D+      +KLP   P++ ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R
Subjt:  REPEVSLSSEPVVREYPDVF----PDKLPGILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR

Query:  LCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIV
        + +DY+ LNK    N YPL  I+ L  ++QG+T+F+K+DL+S+YH +R+R  D  K AFR   G +E++VM +G++ AP  F   +N +  +  +S  + 
Subjt:  LCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIV

Query:  FIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV
        ++DDILI+SK+E+EH  H+  +L+ L+   L    + C+F    V F+G+ +S +G +     I+ V
Subjt:  FIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.5e-4234.9Show/hide
Query:  KASKLLSQGTWGILASVVDTREPEVSLSSEP---------VVREYPDVFPDKLP------GILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQL
        +AS L   G +  + S + + EP  +  S           + ++Y ++  + LP        +P++     IE++PG  L    PY +     +E+   +
Subjt:  KASKLLSQGTWGILASVVDTREPEVSLSSEP---------VVREYPDVFPDKLP------GILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQL

Query:  QELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFI
        Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T  + +PL  ID+L  ++  A +F+ +DL S YHQ+ +   D  KTAF +  G YE+ 
Subjt:  QELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFI

Query:  VMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV
        VM FGL NAP  F   M   F+D    F  V++DDILI+S++  EH  HL  +LE L+   L  K   C+F  +   FLG+ +  + ++    K  A+
Subjt:  VMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.5e-4234.9Show/hide
Query:  KASKLLSQGTWGILASVVDTREPEVSLSSEP---------VVREYPDVFPDKLP------GILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQL
        +AS L   G +  + S + + EP  +  S           + ++Y ++  + LP        +P++     IE++PG  L    PY +     +E+   +
Subjt:  KASKLLSQGTWGILASVVDTREPEVSLSSEP---------VVREYPDVFPDKLP------GILPLREIDFAIELEPGTALISRAPYKMAPAELKELKVQL

Query:  QELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFI
        Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T  + +PL  ID+L  ++  A +F+ +DL S YHQ+ +   D  KTAF +  G YE+ 
Subjt:  QELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSKYGHYEFI

Query:  VMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV
        VM FGL NAP  F   M   F+D    F  V++DDILI+S++  EH  HL  +LE L+   L  K   C+F  +   FLG+ +  + ++    K  A+
Subjt:  VMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVDPAKIEAV

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.3e-0440.38Show/hide
Query:  HLHQILENLRANKLYAKFSNCQFWLKTVTFLG--HVVSNEGVSVDPAKIEAV
        HL  +L+    ++ YA    C F    + +LG  H++S EGVS DPAK+EA+
Subjt:  HLHQILENLRANKLYAKFSNCQFWLKTVTFLG--HVVSNEGVSVDPAKIEAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGATTTTGATTTGATTTTAGGCACGGATTGGCTGTCGGCTAACCATGCAAGTATAGATTGTTTTGGTAAGGAAGTCGTTTTTAACCCTCTCTCTGGGCCTAGTTT
CAAATTTAGGGGGGCAGGCATTATATGTATACCTAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGCATCTTGGCAAGCGTAGTAGATA
CCAGAGAACCAGAAGTTTCCCTGTCCTCCGAACCCGTGGTAAGGGAGTACCCCGATGTTTTCCCCGACAAGCTTCCAGGAATTTTGCCTCTCAGAGAGATAGACTTCGCC
ATCGAGTTAGAGCCGGGCACTGCTCTTATCTCGAGGGCCCCTTACAAAATGGCTCCAGCCGAGCTGAAGGAGCTGAAGGTACAACTACAAGAGTTGCTGGACAAGGGTTT
CATCCGACCCAGTGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGTCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACGACCA
AGAATCGTTACCCCTTGCTCGGGATTGATGACTTGTTCGATCAATTACAGGGAGCCACCGTCTTTTCTAAGATCGATTTGCGATCAAGCTATCACCAGTTGAGGATCAGG
GATAGCGACATTCCTAAGACCGCTTTTCGTTCCAAATACGGGCACTATGAGTTCATTGTGATGTCGTTTGGGTTGACTAATGCTCCTGTGGTATTCATGGACTTGATGAA
CATGGTGTTTAAGGATTTCTTAGACTCGTTCCCCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGGGCATTTGCACCAGATTTTGG
AGAATCTTCGAGCCAATAAGCTGTATGCCAAGTTCTCCAACTGTCAATTTTGGCTGAAGACGGTGACTTTCCTCGGCCACGTGGTTTCCAATGAAGGAGTTTCTGTGGAC
CCAGCAAAGATCGAAGCGGTTACCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTGATTTTGATTTGATTTTAGGCACGGATTGGCTGTCGGCTAACCATGCAAGTATAGATTGTTTTGGTAAGGAAGTCGTTTTTAACCCTCTCTCTGGGCCTAGTTT
CAAATTTAGGGGGGCAGGCATTATATGTATACCTAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGCATCTTGGCAAGCGTAGTAGATA
CCAGAGAACCAGAAGTTTCCCTGTCCTCCGAACCCGTGGTAAGGGAGTACCCCGATGTTTTCCCCGACAAGCTTCCAGGAATTTTGCCTCTCAGAGAGATAGACTTCGCC
ATCGAGTTAGAGCCGGGCACTGCTCTTATCTCGAGGGCCCCTTACAAAATGGCTCCAGCCGAGCTGAAGGAGCTGAAGGTACAACTACAAGAGTTGCTGGACAAGGGTTT
CATCCGACCCAGTGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGTCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACGACCA
AGAATCGTTACCCCTTGCTCGGGATTGATGACTTGTTCGATCAATTACAGGGAGCCACCGTCTTTTCTAAGATCGATTTGCGATCAAGCTATCACCAGTTGAGGATCAGG
GATAGCGACATTCCTAAGACCGCTTTTCGTTCCAAATACGGGCACTATGAGTTCATTGTGATGTCGTTTGGGTTGACTAATGCTCCTGTGGTATTCATGGACTTGATGAA
CATGGTGTTTAAGGATTTCTTAGACTCGTTCCCCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGGGCATTTGCACCAGATTTTGG
AGAATCTTCGAGCCAATAAGCTGTATGCCAAGTTCTCCAACTGTCAATTTTGGCTGAAGACGGTGACTTTCCTCGGCCACGTGGTTTCCAATGAAGGAGTTTCTGTGGAC
CCAGCAAAGATCGAAGCGGTTACCAATTAG
Protein sequenceShow/hide protein sequence
MRDFDLILGTDWLSANHASIDCFGKEVVFNPLSGPSFKFRGAGIICIPKVISAMKASKLLSQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDKLPGILPLREIDFA
IELEPGTALISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTTKNRYPLLGIDDLFDQLQGATVFSKIDLRSSYHQLRIR
DSDIPKTAFRSKYGHYEFIVMSFGLTNAPVVFMDLMNMVFKDFLDSFPIVFIDDILIYSKTEAEHEGHLHQILENLRANKLYAKFSNCQFWLKTVTFLGHVVSNEGVSVD
PAKIEAVTN